254a220590113772e0dab2c037de8024d53c66fb
chinhli
  Tue Dec 18 12:28:39 2012 -0800
redmine 9269: use bedDetail.as for exonJunctionPrimers track.
diff --git src/hg/lib/exonJunctionPrimers.c src/hg/lib/exonJunctionPrimers.c
deleted file mode 100644
index 42d619a..0000000
--- src/hg/lib/exonJunctionPrimers.c
+++ /dev/null
@@ -1,218 +0,0 @@
-/* exonJunctionPrimers.c was originally generated by the autoSql program, which also 
- * generated exonJunctionPrimers.h and exonJunctionPrimers.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "exonJunctionPrimers.h"
-
-
-struct exonJunctionPrimers *exonJunctionPrimersLoad(char **row)
-/* Load a exonJunctionPrimers from row fetched with select * from exonJunctionPrimers
- * from database.  Dispose of this with exonJunctionPrimersFree(). */
-{
-struct exonJunctionPrimers *ret;
-
-AllocVar(ret);
-ret->blockCount = sqlSigned(row[9]);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-safecpy(ret->strand, sizeof(ret->strand), row[5]);
-ret->thickStart = sqlUnsigned(row[6]);
-ret->thickEnd = sqlUnsigned(row[7]);
-ret->reserved = sqlUnsigned(row[8]);
-{
-int sizeOne;
-sqlSignedDynamicArray(row[10], &ret->blockSizes, &sizeOne);
-assert(sizeOne == ret->blockCount);
-}
-{
-int sizeOne;
-sqlSignedDynamicArray(row[11], &ret->chromStarts, &sizeOne);
-assert(sizeOne == ret->blockCount);
-}
-ret->id = cloneString(row[12]);
-ret->description = cloneString(row[13]);
-return ret;
-}
-
-struct exonJunctionPrimers *exonJunctionPrimersLoadAll(char *fileName) 
-/* Load all exonJunctionPrimers from a whitespace-separated file.
- * Dispose of this with exonJunctionPrimersFreeList(). */
-{
-struct exonJunctionPrimers *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[14];
-
-while (lineFileRow(lf, row))
-    {
-    el = exonJunctionPrimersLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct exonJunctionPrimers *exonJunctionPrimersLoadAllByChar(char *fileName, char chopper) 
-/* Load all exonJunctionPrimers from a chopper separated file.
- * Dispose of this with exonJunctionPrimersFreeList(). */
-{
-struct exonJunctionPrimers *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[14];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = exonJunctionPrimersLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct exonJunctionPrimers *exonJunctionPrimersCommaIn(char **pS, struct exonJunctionPrimers *ret)
-/* Create a exonJunctionPrimers out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new exonJunctionPrimers */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->thickStart = sqlUnsignedComma(&s);
-ret->thickEnd = sqlUnsignedComma(&s);
-ret->reserved = sqlUnsignedComma(&s);
-ret->blockCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->blockSizes, ret->blockCount);
-for (i=0; i<ret->blockCount; ++i)
-    {
-    ret->blockSizes[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->chromStarts, ret->blockCount);
-for (i=0; i<ret->blockCount; ++i)
-    {
-    ret->chromStarts[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->id = sqlStringComma(&s);
-ret->description = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void exonJunctionPrimersFree(struct exonJunctionPrimers **pEl)
-/* Free a single dynamically allocated exonJunctionPrimers such as created
- * with exonJunctionPrimersLoad(). */
-{
-struct exonJunctionPrimers *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->blockSizes);
-freeMem(el->chromStarts);
-freeMem(el->id);
-freeMem(el->description);
-freez(pEl);
-}
-
-void exonJunctionPrimersFreeList(struct exonJunctionPrimers **pList)
-/* Free a list of dynamically allocated exonJunctionPrimers's */
-{
-struct exonJunctionPrimers *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    exonJunctionPrimersFree(&el);
-    }
-*pList = NULL;
-}
-
-void exonJunctionPrimersOutput(struct exonJunctionPrimers *el, FILE *f, char sep, char lastSep) 
-/* Print out exonJunctionPrimers.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->thickStart);
-fputc(sep,f);
-fprintf(f, "%u", el->thickEnd);
-fputc(sep,f);
-fprintf(f, "%u", el->reserved);
-fputc(sep,f);
-fprintf(f, "%d", el->blockCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->blockCount; ++i)
-    {
-    fprintf(f, "%d", el->blockSizes[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->blockCount; ++i)
-    {
-    fprintf(f, "%d", el->chromStarts[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->id);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->description);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-