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19 December 2012 -
- 28 new vertebrate assemblies!
+ 28 New Vertebrate Assemblies!
Over the past several weeks, we have released 28 new vertebrate assemblies on the
public Genome Browser website, featuring 22 new species and 6 assembly updates.
These assemblies were added to support the 60-species Conservation track on the
latest mouse assembly (mm10/GRCm38). Several of these species were originally
- sequenced and assembled for the Mammalian Genome Project (Lindblad-Toh et al.,
- Nature 2011)*.
+ sequenced and assembled for the Mammalian Genome Project (Lindblad-Toh
+ et al., Nature 2011)*.
Primates:
- Baboon (Papio hamadryas) papHam1 –
Pham_1.0 (Nov. 2008) from the Baylor College of Medicine HGSC
- Bushbaby (Otolemur garnettii) otoGar3 –
OtoGar3 (Mar. 2011) from the Broad Institute
- Chimpanzee (Pan troglodytes) panTro4 –
Build 2.1.4 (Feb. 2011) from the Chimpanzee Genome Sequencing Consortium
- Gibbon (Nomascus leucogenys) nomLeu2 –
Nleu1.1 (Jun. 2011) from the Gibbon Genome Sequencing Consortium
@@ -138,32 +138,34 @@
credits page for complete acknowledgment
information and data use restrictions. All datasets may be downloaded from our
ftp server or
downloads page.
We regret that we don't have the resources to support the many other
genomics research communities who would like us to visualize their data
in our browser. However, we can provide you with information for setting up
your own browser or track hub to display your data, as well as links to
other visualization resources on the web that are specific to your
genome of interest. Feel free to contact our
mail list for more information.
- * Lindblad-Toh et al. A high-resolution map of human evolutionary
- constraint using 29 mammals. Nature 2011 Oct 12;478(7370):476-82.
+ *Lindblad-Toh K et al.
+ A high-resolution map of human evolutionary constraint using 29
+ mammals. Nature 2011 Oct 12;478(7370):476-82.
14 December 2012 -
Reduced Coverage During the Holidays
The UCSC campus will be closed for the holidays from December 22, 2012 through
January 1, 2013. The Genome Browser will still be available;
however, our backup systems will be offline for two days, December 27 and 28.
During this time if we experience any issues, associated fixes are likely to be
delayed. The help desk will also be minimally staffed during this period. We will
be monitoring the mailing lists for urgent messages, but the bulk of the questions
will go unanswered until early January.
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