81881fe298580da38c5bdb7764c05c03ec278b97
hiram
  Fri Jan 4 11:54:10 2013 -0800
adding cgiExitTime stderr printout to CGI binaries for apache error_log information
diff --git src/hg/hgFileUi/hgFileUi.c src/hg/hgFileUi/hgFileUi.c
index 2a10913..0623946 100644
--- src/hg/hgFileUi/hgFileUi.c
+++ src/hg/hgFileUi/hgFileUi.c
@@ -1,177 +1,179 @@
 #include "common.h"
 #include "hash.h"
 #include "cheapcgi.h"
 #include "htmshell.h"
 #include "jsHelper.h"
 #include "trackDb.h"
 #include "hdb.h"
 #include "web.h"
 #include "mdb.h"
 #include "hCommon.h"
 #include "hui.h"
 #include "fileUi.h"
 
 #define MAIN_FORM "mainForm"
 #define WIGGLE_HELP_PAGE  "../goldenPath/help/hgWiggleTrackHelp.html"
 
 void fileUi(struct cart *cart,struct trackDb *tdb, char *db, char *chrom, boolean ajax)
 // Downloadable Files UI
 {
 if (!ajax)
     {
     jsIncludeFile("jquery.js", NULL);
     webIncludeResourceFile("jquery-ui.css");
     jsIncludeFile("jquery-ui.js", NULL);
     jsIncludeFile("utils.js",NULL);
     }
 
 // QUESTION: Is this needed?  Are we doing a submit on hgTrackUi to get here??  Probably not.
 //if(tdbIsContainer(tdb) && !ajax)
 //    cartTdbTreeReshapeIfNeeded(cart,tdb);
 
 if (trackDbSetting(tdb, "wgEncode"))
     {
     printf("<A HREF='/ENCODE/index.html'><IMG style='vertical-align:middle;' "
            "width=100 src='/images/ENCODE_scaleup_logo.png'><A>");
     }
 printf("<B style='font-size:200%%;'>%s</B>\n", tdb->longLabel);
 
 // If Composite, link to the hgTrackUi.  But if downloadsOnly then link to any superTrack.
 #define LINK_TO_PARENT "%s<b>(<A HREF='%s?%s=%u&c=%s&g=%s' " \
                        "title='Link to %s track settings'><IMG height=12 " \
                        "src='../images/ab_up.gif'>%s</A>)</B>\n"
 if (tdbIsComposite(tdb))
     {
     char *encodedTrackName = cgiEncode(tdb->track);
     printf(LINK_TO_PARENT,"&nbsp;&nbsp;", hgTrackUiName(), cartSessionVarName(),
            cartSessionId(cart), chrom, encodedTrackName,tdb->shortLabel,"Track settings");
     freeMem(encodedTrackName);
     }
 else if (tdb->parent) //Print link for parent track
     {
     char *encodedTrackName = cgiEncode(tdb->parent->track);
     printf(LINK_TO_PARENT,"&nbsp;&nbsp;", hgTrackUiName(), cartSessionVarName(),
            cartSessionId(cart), chrom, encodedTrackName, tdb->parent->shortLabel,
            tdb->parent->shortLabel);
     freeMem(encodedTrackName);
     }
 
 // NAVLINKS - Link to Description down below
 if (tdb->html != NULL && tdb->html[0] != 0)
     {
     printf("<span id='navDown' style='float:right; display:none;'>");
 
     if (trackDbSetting(tdb, "wgEncode"))
         {
         // Link to ENCODE home page
         printf("<A TARGET=_BLANK HREF='../ENCODE/index.html' TITLE='ENCODE Portal'>ENCODE</A>");
         printf("&nbsp;&nbsp;");
         }
 
     // Link to File Search
     printf("<A HREF='hgFileSearch?db=%s' TITLE='Search for other downloadable files ...'>"
             "File Search</A>&nbsp;&nbsp;&nbsp;",db);
 
     // Now link to description
     char *downArrow = "&dArr;";
     enum browserType browser = cgiBrowser();
     if (browser == btIE || browser == btFF)
         downArrow = "&darr;";
     printf("<A HREF='#TRACK_HTML' TITLE='Jump to description section of page'>Description%s</A>",
            downArrow);
     if (trackDbSetting(tdb, "wgEncode"))
         {
         printf("&nbsp;&nbsp;<A HREF='#TRACK_CREDITS' TITLE='Jump to ENCODE lab contacts for this data'>"
            "Contact%s</A>", downArrow);
         }
     printf("</span>");
     }
 puts("<BR>");
 
 filesDownloadUi(db,cart,tdb);
 
 // Print data version trackDB setting, if any */
 char *version = trackDbSetting(tdb, "dataVersion");
 if (version)
     {
     cgiDown(0.7);
     printf("<B>Data version:</B> %s<BR>\n", version);
     }
 
 // Print lift information from trackDb, if any
 (void) trackDbPrintOrigAssembly(tdb, db);
 
 if (tdb->html != NULL && tdb->html[0] != 0)
     {
     char *browserVersion;
     if (btIE == cgiClientBrowser(&browserVersion, NULL, NULL) && *browserVersion < '8')
         htmlHorizontalLine();
     else // Move line down, since <H2>Description (in ->html) is proceded by too much space
         printf("<HR ALIGN='bottom' style='position:relative; top:1em;'>");
 
     printf("<table class='windowSize'><tr valign='top'><td rowspan=2>");
     puts("<A NAME='TRACK_HTML'></A>");    // include anchor for Description link
 
     // Add pennantIcon
     printPennantIconNote(tdb);
 
     char *html = tdb->html;
     if (trackDbSetting(tdb, "wgEncode"))
         {
         // add anchor to Credits section of ENCODE HTML page so contacts are easily found (on top menu)
         html = replaceChars(tdb->html, "2>Credits", "2></H2><A NAME='TRACK_CREDITS'></A>\n<H2>Credits</H2>");
         }
     puts(html);
 
     puts(tdb->html);
     printf("</td><td nowrap>");
     cgiDown(0.7); // positions top link below line
     makeTopLink(tdb);
     printf("&nbsp</td></tr><tr valign='bottom'><td nowrap>");
     makeTopLink(tdb);
     printf("&nbsp</td></tr></table>");
     }
 }
 
 void doMiddle(struct cart *cart)
 /* Write body of web page. */
 {
 struct trackDb *tdb = NULL;
 char *track;
 char *ignored;
 char *db = NULL;
 track = cartString(cart, "g"); // QUESTION: Should this be 'f' ??
 getDbAndGenome(cart, &db, &ignored, NULL);
 char *chrom = cartUsualString(cart, "c", hDefaultChrom(db));
 
 tdb = tdbForTrack(db, track,NULL);// We only need to see one tdb.
 
 
 if (tdb == NULL)
     {
     errAbort("Can't find %s in track database %s", track, db);
     return;
     }
 cartWebStart(cart, db, "%s %s", tdb->shortLabel, DOWNLOADS_ONLY_TITLE);
 
 if (!tdbIsComposite(tdb) && !tdbIsDownloadsOnly(tdb))
     {
     warn("Track '%s' of type %s is not supported by hgFileUi.",track, tdb->type);
     return;
     }
 
 fileUi(cart, tdb, db, chrom, FALSE);
 
 printf("<BR>\n");
 webEnd();
 }
 
 char *excludeVars[] = { "submit", "Submit", "g", "clearCache", "ajax", NULL,};
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
+long enteredMainTime = clock1000();
 cgiSpoof(&argc, argv);
 cartEmptyShell(doMiddle, hUserCookie(), excludeVars, NULL);
+cgiExitTime("hgFileUi", enteredMainTime);
 return 0;
 }