Commits for braney

v278_preview to v278_preview2 (2013-01-08 to 2013-01-15) v278

• do a little clean-up on error if extFile is missing or wrong size. In response to code review #9929. Thanks Angie!
  • src/hg/lib/hdb.c - lines changed 7, context: html, text, full: html, text
• fix bug in first fix in #9668 where hgGene crashed near the bottom of the page which is why no one caught it. Also, added a little code to save position in cart after getting it from a gene name.
  • src/hg/hgGene/hgGene.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/synonym.c - lines changed 6, context: html, text, full: html, text
• increase limit of trackDb.txt to 64Mb. #9937We should probably look into whether we need to have a fixed limit at all
  
  • src/hg/lib/trackHub.c - lines changed 2, context: html, text, full: html, text
• fix linkout URL to DECIPHER #8840
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text
• remove Stanford SOURCE link from refGene and few other places #9962
  • src/hg/hgc/hgc.c - lines changed 30, context: html, text, full: html, text
• ongoing work on UCSC genes for hg19 #9783
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 27, context: html, text, full: html, text
• add an option to pslDiff to check for same locus #7568
  • src/hg/pslDiff/pslDiff.c - lines changed 16, context: html, text, full: html, text
• remove old versions of these scripts #5172
  • src/hg/utils/automation/buildOmimTracks.csh - lines changed 167, context: html, text, full: html, text
  • src/hg/utils/automation/checkOmim.sh - lines changed 129, context: html, text, full: html, text
• the omim track nows gets SNP's out of snp137 instead of snp132 #7311
  • src/hg/makeDb/trackDb/human/omimAvSnp.html - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/omim/buildOmimTracks.csh - lines changed 1, context: html, text, full: html, text