Commits for steve

v278_preview to v278_preview2 (2013-01-08 to 2013-01-15) v278

• Made adjustments for chain/net tracks to appear properly (redmine #9153)
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra - lines changed 4, context: html, text, full: html, text
• Added petMar2 (redmine #9153)
  • src/hg/htdocs/FAQ/FAQreleases.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/credits.html - lines changed 3, context: html, text, full: html, text
• Removed 'glire' and 'euarchontoglire' lines
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
• Removed release tag from petMar1 entry
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
• Uncommented the include statement for the chainNetPetMar1.ra file
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
• Added mm10 tablesIgnored section and added altSeqLiftOverPslP1 and altSeqPatchesP1 to it (redmine #8909)
  • src/hg/makeDb/schema/all.joiner - lines changed 4, context: html, text, full: html, text
• Fixed broken link
  • src/hg/makeDb/trackDb/medaka/oryLat1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/oryLat2/description.html - lines changed 1, context: html, text, full: html, text
• Fixed journal URL - updated from early version to final version - per Brooke's code review (redmine #9919)
  • src/hg/makeDb/trackDb/lamprey/petMar2/cons7way.html - lines changed 1, context: html, text, full: html, text
• Changed 'cpgIslandExt' back to 'cpgIsland%' per Brooke's code review (redmine #9919)
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Added '%20' into photo links per Brooke's code review (redmine #9919); also fixed a broken link in monDom1
  • src/hg/makeDb/trackDb/apis/apiMel1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/apiMel2/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal3/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal4/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom2/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom4/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/monDom5/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn2/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/description.html - lines changed 1, context: html, text, full: html, text
• Uodated journal link; made some other minor corrections (redmine #8840)
  • src/hg/makeDb/trackDb/human/decipher.html - lines changed 25, context: html, text, full: html, text
• Updated journal links; dropped link to PubMed abstract; updated links to FlyBase
  • src/hg/makeDb/trackDb/drosophila/dm3/flyBaseGene.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm3/flyBaseNoncoding.html - lines changed 7, context: html, text, full: html, text
• Updated the lamprey credits section
  • src/hg/htdocs/goldenPath/credits.html - lines changed 7, context: html, text, full: html, text
• Fixed a broken link in the lamprey section
  • src/hg/htdocs/goldenPath/credits.html - lines changed 1, context: html, text, full: html, text