File Changes for tdreszer

v279_preview2 to v279_base (2013-02-05 to 2013-02-12) v279

• src/inc/common.h
  • lines changed 8, context: html, text, full: html, text
    Should have been checked in with common.c. Added slSortMerge and slSortMergeUniq at Angie's request.
• src/inc/localmem.h
  • lines changed 4, context: html, text, full: html, text
    Dropped lmFlushZ function at Angie's request. It added little value over lmCleanup/lmInit.
• src/inc/vcf.h
  • lines changed 14, context: html, text, full: html, text
    Some changes requested by Angie in code review, along with a bug fix. Next checkin will break out the vcfBits routines into separate .c/.h files
  • lines changed 110, context: html, text, full: html, text
    Split vcfBits.c/.h off from vcf.c/.h. No code changes made.
• src/inc/vcfBits.h
  • lines changed 120, context: html, text, full: html, text
    Split vcfBits.c/.h off from vcf.c/.h. No code changes made.
  • lines changed 7, context: html, text, full: html, text
    Updated the file comment in vcfBits.c/.h. No code change.
• src/lib/common.c
  • lines changed 18, context: html, text, full: html, text
    Added slSortMerge and slSortMergeUniq at Angie's request. These functions are little more than wrappers for slSort and slUniqify but are still valuable additions.
• src/lib/elmTree.c
  • lines changed 39, context: html, text, full: html, text
    Name changes to clarify code, made at Angie's request. No functional changes here.
• src/lib/localmem.c
  • lines changed 12, context: html, text, full: html, text
    Dropped lmFlushZ function at Angie's request. It added little value over lmCleanup/lmInit.
• src/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Split vcfBits.c/.h off from vcf.c/.h. No code changes made.
• src/lib/vcf.c
  • lines changed 59, context: html, text, full: html, text
    Some changes requested by Angie in code review, along with a bug fix. Next checkin will break out the vcfBits routines into separate .c/.h files
  • lines changed 450, context: html, text, full: html, text
    Split vcfBits.c/.h off from vcf.c/.h. No code changes made.
• src/lib/vcfBits.c
  • lines changed 463, context: html, text, full: html, text
    Split vcfBits.c/.h off from vcf.c/.h. No code changes made.
  • lines changed 7, context: html, text, full: html, text
    Updated the file comment in vcfBits.c/.h. No code change.