8c8ab9f5d0f2cfc47964304f2e0c3a7ad56e1c93
braney
  Fri Jan 25 11:06:31 2013 -0800
take out some errAborts in gpFX.c that were in there just to remind me to write code .  Requested by Angie
diff --git src/hg/lib/gpFx.c src/hg/lib/gpFx.c
index d059d01..6395bd3 100644
--- src/hg/lib/gpFx.c
+++ src/hg/lib/gpFx.c
@@ -227,38 +227,38 @@
 	dyStringPrintf(dy, ",");
     }
 
 return dy->string;
 }
 
 struct gpFx *gpFxCheckUtr( struct allele *allele, struct genePred *pred, 
     int exonNum, struct psl *transcriptPsl, struct dnaSeq *transcriptSequence,
     char *newSequence)
 /* check for effects in UTR of coding gene */
 {
 if (positiveRangeIntersection(pred->txStart, pred->cdsStart,
 	allele->variant->chromStart, allele->variant->chromEnd))
     {
     // we're in 5' UTR ( or UTR intron )
-    errAbort("don't support variants in 5' UTR");
+    //errAbort("don't support variants in 5' UTR");
     }
 
 if (positiveRangeIntersection(pred->txStart, pred->cdsStart,
 	allele->variant->chromStart, allele->variant->chromEnd))
     {
     // we're in 3' UTR
-    errAbort("don't support variants in 3' UTR");
+    //errAbort("don't support variants in 3' UTR");
     }
 
 return NULL;
 }
 
 struct gpFx *gpFxChangedNoncodingTranscript( struct allele *allele, struct genePred *pred, 
     int exonNum, struct psl *transcriptPsl, struct dnaSeq *transcriptSequence,
     char *newSequence)
 /* generate an effect for a variant in a non-coding transcript */
 {
 return NULL;
 //    errAbort("found a change in non-coding gene. we don't support non-coding genes at the moment");
 }
 
 struct gpFx *gpFxChangedCodingTranscript( struct allele *allele, struct genePred *pred,