4776c4d03b50533d3e6bb13374baf55c0a28e183
galt
  Fri Jan 25 17:07:08 2013 -0800
Revert "Add ability to tolerate paths in .2bit filename with gfServer. Paths are removed leaving only the filename. Clients are on other machines and therefore cannnot use them in general."
This reverts commit ef98cc65cd9626157087f5ad3dd6eac5012c50d8.

Turns out that on some rare cases the relative paths were useful.
Instead will add a message to gfServer explaining better how the
paths in the filenames given will be used.

diff --git src/blat/version.doc src/blat/version.doc
index 9c2d1b4..5271139 100644
--- src/blat/version.doc
+++ src/blat/version.doc
@@ -1,16 +1,15 @@
-     o (in 35x2) added ability for gfServer to tolerate path in .2bit name
      o (in 35x1) added repMatch default values for tileSizes 16 to 18 in genoFind.c
 
 35:
      o (in 34x1) Making total query output reporting a 64 bit number to avoid 
        overflow when people using more than 4 gig of query sequence.
      o (in 34x2) Fixed -out=blast to use +/- instead of -/+ for non-translated.
      o (in 34x3) Fixed -minScore, filter was not working when over half query-size.
      o (in 34x4) Made it convert u's to t's for RNA sequence stuff.
      o (in 34x5) Made gfServer calculate repMatch based on stepSize/tileSize combination the way blat does
        rather than just being good for stepSize 11.
      o (in 34x6) Fixed negative strand pcr psl output
      o (in 34x7) Made it check and error out if the same name is reused in the target database.
      o (in 34x8) Truncate in output PCR primers that dangle off target chrom ends.
      o (in 34x9) If -fastMap is used, check that query sizes do not exceed MAXSINGLEPIECESIZE.
      o (in 34x10) Added IP-logging option to gfServer.