4776c4d03b50533d3e6bb13374baf55c0a28e183
galt
  Fri Jan 25 17:07:08 2013 -0800
Revert "Add ability to tolerate paths in .2bit filename with gfServer. Paths are removed leaving only the filename. Clients are on other machines and therefore cannnot use them in general."
This reverts commit ef98cc65cd9626157087f5ad3dd6eac5012c50d8.

Turns out that on some rare cases the relative paths were useful.
Instead will add a message to gfServer explaining better how the
paths in the filenames given will be used.

diff --git src/gfServer/gfServer.c src/gfServer/gfServer.c
index 067cbc6..53c87c0 100644
--- src/gfServer/gfServer.c
+++ src/gfServer/gfServer.c
@@ -516,38 +516,30 @@
     uglyf("starting translated server...\n");
     logInfo("setting up translated index");
     gfIndexTransNibsAndTwoBits(transGf, fileCount, seqFiles, 
     	minMatch, maxGap, tileSize, repMatch, NULL, allowOneMismatch, 
 	doMask, stepSize);
     }
 else
     {
     uglyf("starting untranslated server...\n");
     logInfo("setting up untranslated index");
     gf = gfIndexNibsAndTwoBits(fileCount, seqFiles, minMatch, 
     	maxGap, tileSize, repMatch, NULL, allowOneMismatch, stepSize);
     }
 logInfo("indexing complete");
 
-/* Strip path off of file names since they are of no use to clients that are on other machines */
-int i;
-for (i=0; i<fileCount; ++i)
-    {
-    seqFiles[i] = getFileNameOnly(seqFiles[i]);
-    }
-
-
 /* Set up socket.  Get ready to listen to it. */
 socketHandle = netAcceptingSocket(port, 100);
 if (socketHandle < 0)
     errAbort("Fatal Error: Unable to open listening socket on port %d.", port);
 
 logInfo("Server ready for queries!");
 printf("Server ready for queries!\n");
 int connectFailCount = 0;
 for (;;)
     {
     ZeroVar(&fromAddr);
     fromLen = sizeof(fromAddr);
     connectionHandle = accept(socketHandle, (struct sockaddr*)&fromAddr, &fromLen);
     if (connectionHandle < 0)
         {