4776c4d03b50533d3e6bb13374baf55c0a28e183
galt
  Fri Jan 25 17:07:08 2013 -0800
Revert "Add ability to tolerate paths in .2bit filename with gfServer. Paths are removed leaving only the filename. Clients are on other machines and therefore cannnot use them in general."
This reverts commit ef98cc65cd9626157087f5ad3dd6eac5012c50d8.

Turns out that on some rare cases the relative paths were useful.
Instead will add a message to gfServer explaining better how the
paths in the filenames given will be used.

diff --git src/inc/genoFind.h src/inc/genoFind.h
index 8cc84de..fb6fa0c 100644
--- src/inc/genoFind.h
+++ src/inc/genoFind.h
@@ -367,19 +367,19 @@
    int minScore, struct gfOutput *out);
 /* Chop up query into pieces, align each in translated space, and stitch back
  * together again as nucleotides. */
 
 struct gfClump *gfPcrClumps(struct genoFind *gf, 
         char *fPrimer, int fPrimerSize, char *rPrimer, int rPrimerSize,
 	int minDistance, int maxDistance);
 /* Find possible PCR hits.  The fPrimer and rPrimer are on opposite strands.
  * Note: unlike clumps from other query functions, PCR clumps from this 
  * function have already had clump->target->start subtracted from 
  * clump->tStart and clump->tEnd so that the coords are relative to that 
  * target sequence (not the collection of all target sequences). */
 
 #define MAXSINGLEPIECESIZE 5000 /* maximum size of a single piece */
 
-#define gfVersion "35x2"	/* Current BLAT version number */
+#define gfVersion "35x1"	/* Current BLAT version number */
 
 #endif /* GENOFIND_H */