Commits for markd

v278_base to v279_preview (2013-01-22 to 2013-01-29) v279

• Added option to pslCDnaFilter to output an indentification of the haplotype locigrouping that were defined when using haplotype map filtering.
  
  • src/hg/pslCDnaFilter/cDnaAligns.c - lines changed 32, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/cDnaAligns.h - lines changed 8, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/pslCDnaFilter.c - lines changed 9, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/tests/expected/hapGlobalTest/hapLoci.id-psl - lines changed 12, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/tests/expected/hapLocalTest/hapLoci.id-psl - lines changed 12, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/tests/expected/hapLocalXenoTest/hapLoci.id-psl - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/pslCDnaFilter/tests/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/usage.txt - lines changed 7, context: html, text, full: html, text