Commits for kent

v279_base to v280_preview (2013-02-12 to 2013-02-19) v280

• A little utility I needed to debug some input to centromere maker - counts words in each line of a file separately.
  • src/utils/wordsInEachLine/makefile - lines changed 18, context: html, text, full: html, text
  • src/utils/wordsInEachLine/wordsInEachLine.c - lines changed 45, context: html, text, full: html, text
• New transparency idea tester starting to work.
  • src/hg/oneShot/transparentTriangleTest/transparentTriangleTest.c - lines changed 188, context: html, text, full: html, text
• Working out some image normalization stuff.
  • src/hg/oneShot/transparentTriangleTest/transparentTriangleTest.c - lines changed 60, context: html, text, full: html, text
• Making test program produce 10 shades at once.
  • src/hg/oneShot/transparentTriangleTest/transparentTriangleTest.c - lines changed 39, context: html, text, full: html, text
• Making horizontal line setter work with transparent mode. Doing a microoptimization in transparent put dot.
  • src/lib/memgfx.c - lines changed 13, context: html, text, full: html, text
• Exposing veryLightRainbowAtPos to rest of code.
  • src/inc/rainbow.h - lines changed 4, context: html, text, full: html, text
• Testing out some log/exponential math for color transparencies.
  • src/hg/oneShot/freen/freen.c - lines changed 48, context: html, text, full: html, text
• Further experiments on color transparency.
  • src/hg/oneShot/transparentTriangleTest/transparentTriangleTest.c - lines changed 23, context: html, text, full: html, text
• Adding transparency setting to wigCart.
  • src/hg/hgTracks/wigCommon.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c - lines changed 5, context: html, text, full: html, text
• Some refactoring to make it easier to do normalized transparency.
  • src/hg/hgTracks/wigTrack.c - lines changed 36, context: html, text, full: html, text
• A little program to massage Karen's centromeric data which looks maybe like it's reversed in some cases.
  • src/kehayden/reverseCenReads/makefile - lines changed 18, context: html, text, full: html, text
  • src/kehayden/reverseCenReads/reverseCenReads.c - lines changed 56, context: html, text, full: html, text
• Fixed off by one bug.
  • src/kehayden/reverseCenReads/reverseCenReads.c - lines changed 1, context: html, text, full: html, text
• LIttle utility to reverse order of lines in file.
  • src/utils/reverseLineOrder/reverseLineOrder.c - lines changed 44, context: html, text, full: html, text