c6158bf203c8343c2562d8886f5bd9b1405b47dc hiram Tue Feb 19 13:56:24 2013 -0800 cosmic is changing its WEB site URL redmine 9386 diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index 9b2ee2f..aef95e9 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -9264,37 +9264,35 @@ mut_aa = row[ii];ii++; tumour_site = row[ii];ii++; mutated_samples = row[ii];ii++; examined_samples = row[ii];ii++; mut_freq = row[ii];ii++; // chromosome name adjustment if (sameString(chromosome, "23")) chromosome = "X"; if (sameString(chromosome, "24")) chromosome = "Y"; if (sameString(chromosome, "25")) chromosome = "M"; chp = strstr(itemName, "COSM")+strlen("COSM"); - printf("COSMIC ID: %s", chp); - - printf(" (click here for more details at COSMIC site)\n", url, chp); + printf("COSMIC ID: %s (details at COSMIC site)", url, chp, chp); // Embed URL to COSMIC site per COSMICT request. printf("
Source: "); - printf("%s\n", source); + printf("%s\n", source); printf("
Gene Name: %s\n", gene_name); printf("
Accession Number: %s\n", accession_number); printf("
Genomic Position: chr%s:%s-%s", chromosome, grch37_start, grch37_stop); printf("
Mutation Description: %s\n", mut_description); printf("
Mutation Syntax CDS: %s\n", mut_syntax_cds); printf("
Mutation Syntax AA: %s\n", mut_syntax_aa); printf("
Mutation NT: %s\n", mut_nt); printf("
Mutation AA: %s\n", mut_aa); safef(query2, sizeof(query2), "select count(tumour_site) from cosmicRaw where cosmic_mutation_id='%s'", itemName); sr2 = sqlMustGetResult(conn2, query2); row2 = sqlNextRow(sr2);