c6158bf203c8343c2562d8886f5bd9b1405b47dc hiram Tue Feb 19 13:56:24 2013 -0800 cosmic is changing its WEB site URL redmine 9386 diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index 9b2ee2f..aef95e9 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -9264,37 +9264,35 @@ mut_aa = row[ii];ii++; tumour_site = row[ii];ii++; mutated_samples = row[ii];ii++; examined_samples = row[ii];ii++; mut_freq = row[ii];ii++; // chromosome name adjustment if (sameString(chromosome, "23")) chromosome = "X"; if (sameString(chromosome, "24")) chromosome = "Y"; if (sameString(chromosome, "25")) chromosome = "M"; chp = strstr(itemName, "COSM")+strlen("COSM"); - printf("<B>COSMIC ID:</B> %s", chp); - - printf(" (click <A HREF=\"%s&id=%s\" TARGET=_BLANK>here</A> for more details at COSMIC site)\n", url, chp); + printf("<B>COSMIC ID:</B> <A HREF=\"%s%s\" TARGET=_BLANK>%s</A> (details at COSMIC site)", url, chp, chp); // Embed URL to COSMIC site per COSMICT request. printf("<BR><B>Source:</B> "); - printf("<A HREF=\"http://www.sanger.ac.uk/cosmic/\" TARGET=_BLANK>%s</A>\n", source); + printf("<A HREF=\"http://cancdr.sanger.ac.uk/cancergenome/projects/cosmic/\" TARGET=_BLANK>%s</A>\n", source); printf("<BR><B>Gene Name:</B> %s\n", gene_name); printf("<BR><B>Accession Number:</B> %s\n", accession_number); printf("<BR><B>Genomic Position:</B> chr%s:%s-%s", chromosome, grch37_start, grch37_stop); printf("<BR><B>Mutation Description:</B> %s\n", mut_description); printf("<BR><B>Mutation Syntax CDS:</B> %s\n", mut_syntax_cds); printf("<BR><B>Mutation Syntax AA:</B> %s\n", mut_syntax_aa); printf("<BR><B>Mutation NT:</B> %s\n", mut_nt); printf("<BR><B>Mutation AA:</B> %s\n", mut_aa); safef(query2, sizeof(query2), "select count(tumour_site) from cosmicRaw where cosmic_mutation_id='%s'", itemName); sr2 = sqlMustGetResult(conn2, query2); row2 = sqlNextRow(sr2);