9af5c5bbca4f6a2c7d4a4480f87a8fd99b5cc844
hiram
  Tue Feb 19 12:10:30 2013 -0800
add clean makefile target and expand description of ignoreDups usage message
diff --git src/utils/faToTwoBit/makefile src/utils/faToTwoBit/makefile
index 9822051..ef57902 100644
--- src/utils/faToTwoBit/makefile
+++ src/utils/faToTwoBit/makefile
@@ -1,31 +1,34 @@
 include ../../inc/common.mk
 
 L += -lm ${SOCKETLIB}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = ${MYLIBDIR}/jkweb.a
 
 A = faToTwoBit
 O = faToTwoBit.o
 
 faToTwoBit: ${O} ${MYLIBS}
 	@${MKDIR} "${DESTDIR}${BINDIR}"
 	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} ${L}
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
+compile:: ${O} ${MYLIBS}
+	${CC} ${COPT} ${CFLAGS} -o ${A}${EXE} $O ${MYLIBS} ${L}
+
 clean::
-	rm -f ${O}
+	rm -f ${O} ${A}
 
 test:
 	${MKDIR} tests/output
 	faToTwoBit tests/input/noDna.fa tests/output/noDna.2bit 2> tests/output/noDna.out
 	diff tests/expected/noDna.out tests/output/noDna.out
 	twoBitToFa tests/output/noDna.2bit tests/output/noDna.fa
 	diff tests/expected/noDna.fa tests/output/noDna.fa
 	faToTwoBit tests/input/testN.fa tests/output/testN.2bit
 	twoBitToFa tests/output/testN.2bit tests/output/testN.fa
 	diff tests/input/testN.fa tests/output/testN.fa
 	faToTwoBit tests/input/testMask.fa tests/output/testMask.2bit
 	twoBitToFa tests/output/testMask.2bit tests/output/testMask.fa
 	diff tests/input/testMask.fa tests/output/testMask.fa
 	faToTwoBit -stripVersion tests/input/genbank.fa tests/output/genbank.2bit
 	twoBitToFa tests/output/genbank.2bit tests/output/genbank.strip.fa