File Changes for braney

v281_preview2 to v281_base (2013-03-19 to 2013-03-25) v281

• src/hg/hgSession/hgSession.c
  • lines changed 1, context: html, text, full: html, text
    fold back in the changes Angie made in the commit before my last commit. Change cartCopyCustomTracks() to not take a database argument since it's interation over all the "ctfile_*" in the cart anyway.All of this is to fix the problem that now loading a cart and connecting to hubs is what should be an atomic act. As it was, there were some hdb routines called after a new cart was loaded, but before the referenced hubs were loaded.
    As it is now, hgSession will load new carts without reloading the associated hubs. This would only be a problem with assembly hubs, and I don't think it matters since hgSession isn't displaying hub data anyway.
    
• src/hg/inc/cart.h
  • lines changed 2, context: html, text, full: html, text
    oops.... forgot to update this declaration
  • lines changed 3, context: html, text, full: html, text
    fold back in the changes Angie made in the commit before my last commit. Change cartCopyCustomTracks() to not take a database argument since it's interation over all the "ctfile_*" in the cart anyway.All of this is to fix the problem that now loading a cart and connecting to hubs is what should be an atomic act. As it was, there were some hdb routines called after a new cart was loaded, but before the referenced hubs were loaded.
    As it is now, hgSession will load new carts without reloading the associated hubs. This would only be a problem with assembly hubs, and I don't think it matters since hgSession isn't displaying hub data anyway.
    
• src/hg/lib/cart.c
  • lines changed 24, context: html, text, full: html, text
    fold back in the changes Angie made in the commit before my last commit. Change cartCopyCustomTracks() to not take a database argument since it's interation over all the "ctfile_*" in the cart anyway.All of this is to fix the problem that now loading a cart and connecting to hubs is what should be an atomic act. As it was, there were some hdb routines called after a new cart was loaded, but before the referenced hubs were loaded.
    As it is now, hgSession will load new carts without reloading the associated hubs. This would only be a problem with assembly hubs, and I don't think it matters since hgSession isn't displaying hub data anyway.
    
• src/hg/lib/ceBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/hg/lib/dmBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/hg/lib/drBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/hg/lib/hgBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/hg/lib/mmBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/hg/lib/rnBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/hg/lib/scBlastTab.as
  • lines changed 17, context: html, text, full: html, text
    add an as file for seven of the blastTab tables so the decription will be more clear as to their contents fixes #9363
• src/inc/portable.h
  • lines changed 2, context: html, text, full: html, text
    fix a problem that Hiram found where twoBitIsFile was errAborting if you gave it a directory name which is how netToAxt was calling it.
• src/lib/osunix.c
  • lines changed 12, context: html, text, full: html, text
    fix a problem that Hiram found where twoBitIsFile was errAborting if you gave it a directory name which is how netToAxt was calling it.
• src/lib/twoBit.c
  • lines changed 4, context: html, text, full: html, text
    fix a problem that Hiram found where twoBitIsFile was errAborting if you gave it a directory name which is how netToAxt was calling it.