ec51eb191d235e9f9fcd5346825aaf0815c69cf6
kent
  Thu Mar 21 11:27:00 2013 -0700
Renaming bedOutputN_Opt into bedOutFlexible and making it a public function.
diff --git src/inc/basicBed.h src/inc/basicBed.h
index 30fd522..c8c4bd8 100644
--- src/inc/basicBed.h
+++ src/inc/basicBed.h
@@ -158,37 +158,47 @@
 /* Load bed entries from a tab-separated file that have the given chrom.
  * Dispose of this with bedFreeList(). */
 
 struct bed *bedLoadNAll(char *fileName, int numFields);
 /* Load all bed from a tab-separated file.
  * Dispose of this with bedFreeList(). */
 
 struct bed *bedLoadAll(char *fileName);
 /* Determines how many fields are in a bedFile and load all beds from
  * a tab-separated file.  Dispose of this with bedFreeList(). */
 
 void bedLoadAllReturnFieldCount(char *fileName, struct bed **retList, int *retFieldCount);
 /* Load bed of unknown size and return number of fields as well as list of bed items.
  * Ensures that all lines in bed file have same field count. */
 
+void bedLoadAllReturnFieldCountAndRgb(char *fileName, struct bed **retList, int *retFieldCount, 
+    boolean *retRgb);
+/* Load bed of unknown size and return number of fields as well as list of bed items.
+ * Ensures that all lines in bed file have same field count.  Also returns whether 
+ * column 9 is being used as RGB or not. */
+
 void bedOutputN(struct bed *el, int wordCount, FILE *f, char sep, char lastSep);
 /* Write a bed of wordCount fields. */
 
 void bedOutputNitemRgb(struct bed *el, int wordCount, FILE *f,
 	char sep, char lastSep);
 /* Write a bed of wordCount fields, interpret column 9 as RGB. */
 
+void bedOutFlexible(struct bed *el, int wordCount, FILE *f,
+	char sep, char lastSep, boolean useItemRgb);
+/* Write a bed of wordCount fields, optionally interpreting field nine as R,G,B values. */
+
 #define bedTabOutNitemRgb(el,wordCount, f) bedOutputNitemRgb(el,wordCount,f,'\t','\n')
 /* Print out bed as a line in a tab-separated file. Interpret
    column 9 as RGB */
 
 #define bedTabOutN(el,wordCount, f) bedOutputN(el,wordCount,f,'\t','\n')
 /* Print out bed as a line in a tab-separated file. */
 
 #define bedCommaOutN(el,wordCount, f) bedOutputN(el,wordCount,f,',',',')
 /* Print out bed as a comma separated list including final comma. */
 
 int bedTotalBlockSize(struct bed *bed);
 /* Return total size of all blocks. */
 
 int bedTotalThickBlockSize(struct bed *bed);
 /* Return total size of all thick blocks. */