cba385d35f17723bf01e8cdedffb45b6cdf4f809
kuhn
  Tue Mar 19 14:40:48 2013 -0700
commented out a link from COSMIC track details that goes only to their main site.  It is redundant with a link in Description.  Also repaired the link so it works in case we want to add it back ever.  Fixed spelling of Tumour to Tumor
diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 4c1bae5..fd7080e 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -9264,32 +9264,32 @@
     examined_samples    = row[ii];ii++;
     mut_freq            = row[ii];ii++;
 
     // chromosome name adjustment
     if (sameString(chromosome, "23"))
 	chromosome = "X";    
     if (sameString(chromosome, "24"))
 	chromosome = "Y";    
     if (sameString(chromosome, "25"))
 	chromosome = "M";    
 
     chp = strstr(itemName, "COSM")+strlen("COSM");
     printf("<B>COSMIC ID:</B> <A HREF=\"%s%s\" TARGET=_BLANK>%s</A> (details at COSMIC site)", url, chp, chp);
 
     // Embed URL to COSMIC site per COSMICT request.
-    printf("<BR><B>Source:</B> ");
-    printf("<A HREF=\"http://cancdr.sanger.ac.uk/cancergenome/projects/cosmic/\" TARGET=_BLANK>%s</A>\n", source);
+    // printf("<BR><B>Source:</B> ");
+    // printf("<A HREF=\"http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/\" TARGET=_BLANK>%s</A>\n", source);
 
     printf("<BR><B>Gene Name:</B> %s\n", gene_name);
     printf("<BR><B>Accession Number:</B> %s\n", accession_number);
     printf("<BR><B>Genomic Position:</B> chr%s:%s-%s", chromosome, grch37_start, grch37_stop);
     printf("<BR><B>Mutation Description:</B> %s\n", mut_description);
     printf("<BR><B>Mutation Syntax CDS:</B> %s\n", mut_syntax_cds);
     printf("<BR><B>Mutation Syntax AA:</B> %s\n", mut_syntax_aa);
     printf("<BR><B>Mutation NT:</B> %s\n", mut_nt);
     printf("<BR><B>Mutation AA:</B> %s\n", mut_aa);
 
     safef(query2, sizeof(query2),
       "select count(tumour_site) from cosmicRaw where cosmic_mutation_id='%s'", itemName);
 
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
@@ -9310,31 +9310,31 @@
       "tumour_site,mutated_samples,examined_samples,mut_freq ",
       itemName);
 
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
     while (row2 != NULL)
         {
         int ii;
         ii=0;
         tumour_site             = row2[ii];ii++;
         mutated_samples         = row2[ii];ii++;
         examined_samples        = row2[ii];ii++;
         mut_freq                = row2[ii];ii++;
 
         if (multipleTumorSites) printf("<BR>");
-        printf("<BR><B>%sTumour Site:</B> %s\n",        indentString, tumour_site);
+        printf("<BR><B>%sTumor Site:</B> %s\n",         indentString, tumour_site);
         printf("<BR><B>%sMutated Samples:</B> %s\n",    indentString, mutated_samples);
         printf("<BR><B>%sExamined Samples:</B> %s\n",   indentString, examined_samples);
         printf("<BR><B>%sMutation Frequency:</B> %s\n", indentString, mut_freq);
         row2 = sqlNextRow(sr2);
         }
     sqlFreeResult(&sr2);
 
     safef(query2, sizeof(query2),
       "select sum(mutated_samples) from cosmicRaw where cosmic_mutation_id='%s'",
       itemName);
 
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
     if (row2 != NULL)
         {