Commits for steve

v281_preview2 to v281_base (2013-03-19 to 2013-03-25) v281

• Lowered minCheck threshold of entry in refSeqId identifier section from 0.35 to 0.32 which fixed an hg19 joinerCheck error
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Finished genome-euro help doc. Commented out line from hgTracksHelp that points to the genome-euro doc. When we go live with genome-euro, it can be un-commented. (redmine #9767)
  • src/hg/htdocs/goldenPath/help/genomeEuro.html - lines changed 47, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 3, context: html, text, full: html, text
• Removed the paragraph about moving custom tracks. Bob, Brooke and I decided not to address that for now. (redmine #9767)
  • src/hg/htdocs/goldenPath/help/genomeEuro.html - lines changed 7, context: html, text, full: html, text
• Changed hg19.kg5ToKg6.newId to kgDb.kg5ToKg6.newId so it would include mm10 as well (redmine #10442)
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Removed droWil1 and mm6 from the database definitions as these assemblies aren't even on dev anymore; they are not mentioned anywhere else in all.joiner
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
• Reduced the minCheck threshold from 0.97 to 0.96 for two entries which fixed an ornAna1 joinerCheck error (redmine #9407)
  • src/hg/makeDb/schema/all.joiner - lines changed 2, context: html, text, full: html, text
• Added rn5 to the ensGeneDb list (redmine #9407)
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text