File Changes for chinhli

v280_base to v281_preview (2013-03-05 to 2013-03-12) v281

• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 3, context: html, text, full: html, text
    redmine Bug #10358 rebuild rn4.knownToEnsembl using rgdGene2 instead of knownGene.
• src/hg/makeDb/doc/panPan1.txt
  • lines changed 46, context: html, text, full: html, text
    Finished doRepeatMasker
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 15, context: html, text, full: html, text
    adding panPan1 bonobo
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    adding definition for panPanNames Pan paniscus
  • lines changed 1, context: html, text, full: html, text
    adding definition for panPanNames Pan paniscus
• src/hg/makeDb/schema/all.joiner
  • lines changed 10, context: html, text, full: html, text
    Ignore all numt* tables for all assemblies.
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    Change the short lable 'NumtS on mitochondrion' to 'NumtS on chrM'.
• src/hg/utils/automation/doEnsGeneUpdate.pl
  • lines changed 1, context: html, text, full: html, text
    Should use .allGenes.gp.gz instead of .all.genes.gp.gz.
• src/hg/utils/automation/ensGene/rn4.ensGene.ra
  • lines changed 3, context: html, text, full: html, text
    redmine Bug #10358 rebuild rn4.knownToEnsembl using rgdGene2 instead of knownGene.
• src/hg/utils/automation/ensGene/rn5.ensGene.ra
  • lines changed 3, context: html, text, full: html, text
    redmine Bug #10358 rebuild rn4.knownToEnsembl using rgdGene2 instead of knownGene.
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v281 preview1