0d4174649f05f3d97544de244b7eef6ed6cd161a kent Tue Feb 26 16:03:41 2013 -0800 Removing some debugging uglyfs diff --git src/utils/bigBedNamedItems/bigBedNamedItems.c src/utils/bigBedNamedItems/bigBedNamedItems.c index b048a35..6829294 100644 --- src/utils/bigBedNamedItems/bigBedNamedItems.c +++ src/utils/bigBedNamedItems/bigBedNamedItems.c @@ -41,31 +41,30 @@ boolean bigBedNameQuery(struct bbiFile *bbi, char *name, FILE *f) /* Write item matching name to file. Return TRUE if anything written. */ { bigBedAttachNameIndex(bbi); boolean isSwapped = bbi->isSwapped; struct offsetSize {bits64 offset; bits64 size;} block; boolean didWrite = FALSE; if (bptFileFind(bbi->nameBpt, name, strlen(name), &block, sizeof(block))) { if (bbi->isSwapped) { block.offset = byteSwap64(block.offset); block.size = byteSwap64(block.size); } - uglyf("found block at %llu size %llu\n", block.offset, block.size); /* Read in raw data */ udcSeek(bbi->udc, block.offset); char *rawData = needLargeMem(block.size); udcRead(bbi->udc, rawData, block.size); /* Optionally uncompress data, and set data pointer to uncompressed version. */ char *uncompressedData = NULL; char *data = NULL; int dataSize = 0; if (bbi->uncompressBufSize > 0) { data = uncompressedData = needLargeMem(bbi->uncompressBufSize); dataSize = zUncompress(rawData, block.size, uncompressedData, bbi->uncompressBufSize); } @@ -82,31 +81,30 @@ /* Read next record into local variables. */ while (blockPt < blockEnd) { bits32 chromIx = memReadBits32(&blockPt, isSwapped); bits32 s = memReadBits32(&blockPt, isSwapped); bits32 e = memReadBits32(&blockPt, isSwapped); int c; dyStringClear(dy); while ((c = *blockPt++) >= 0) { if (c == 0) break; dyStringAppendC(dy, c); } - uglyf("?%s\n", dy->string); if (startsWithWordByDelimiter(name, '\t', dy->string)) { char chromName[bbi->chromBpt->keySize+1]; bptStringKeyAtPos(bbi->chromBpt, chromIx, chromName, sizeof(chromName)); fprintf(f, "%s\t%u\t%u\t%s\n", chromName, s, e, dy->string); didWrite = TRUE; } } /* Clean up temporary buffers. */ dyStringFree(&dy); freez(&uncompressedData); freez(&rawData); } return didWrite;