File Changes for galt

v281_preview to v281_preview2 (2013-03-12 to 2013-03-19) v281

• src/hg/encode/makefile
  • lines changed 2, context: html, text, full: html, text
    adding support for hg/encode3/ to makefile system
• src/hg/encode/validateFiles/README
  • lines changed 18, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/expected/bam1.out
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/expected/bed12ok.out
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/expected/bigWig1.out
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/expected/bigWigTruncated.out
  • lines changed 2, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/expected/tagAlign1.out
  • lines changed 6, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/expected/tagAlign2.out
  • lines changed 6, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bam1.bam
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bed12.as.note
  • lines changed 2, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bed12bad.txt
  • lines changed 69, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bed12ok.txt
  • lines changed 10, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bed6bad.txt
  • lines changed 15, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bigWig1.bw
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/bigWigTruncated.bw
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/gnfAtlas2.bed15
  • lines changed 10, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/hg18_chromInfo.txt
  • lines changed 49, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/hg19_chromInfo.txt
  • lines changed 93, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/hugechrom1.txt
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/tagAlign1.txt
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/input/tagAlign2.txt
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/makefile
  • lines changed 34, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodFemaleHg18.gappedPeak
  • lines changed 13, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodFemaleHg19.bed10
  • lines changed 34, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodFemaleHg19.bed11
  • lines changed 35, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodFemaleHg19.bed12
  • lines changed 35, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodFemaleHg19.narrowPeak
  • lines changed 40, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodHg18.fasta
  • lines changed 50, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodHg19.csfasta
  • lines changed 49, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodHg19.csqual
  • lines changed 49, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodHg19.fastq
  • lines changed 100, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg18.bedGraph
  • lines changed 29, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg18.pairedTagAlign
  • lines changed 63, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg18.tagAlign
  • lines changed 150, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed3
  • lines changed 89, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed4
  • lines changed 91, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed5
  • lines changed 89, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed6
  • lines changed 90, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed7
  • lines changed 141882, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed8
  • lines changed 141883, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bed9
  • lines changed 141884, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.bedRrbs
  • lines changed 141883, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.broadPeak
  • lines changed 94, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.broadPeak.gz
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMaleHg19.short.bedRrbs
  • lines changed 2000, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodMalehg19.bedRnaElements
  • lines changed 624500, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodNoGenderHg19.bed15
  • lines changed 40, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/tests/goodNoGenderHg19.bedLogR
  • lines changed 69, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 1829, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode/validateFiles/validateFilesUsage
  • lines changed 59, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/makefile
  • lines changed 44, context: html, text, full: html, text
    adding support for hg/encode3/ to makefile system
• src/hg/encode3/validateFiles/README
  • lines changed 18, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/expected/bam1.out
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/expected/bed12ok.out
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/expected/bigWig1.out
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/expected/bigWigTruncated.out
  • lines changed 2, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/expected/tagAlign1.out
  • lines changed 6, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/expected/tagAlign2.out
  • lines changed 6, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bam1.bam
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bed12.as.note
  • lines changed 2, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bed12bad.txt
  • lines changed 69, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bed12ok.txt
  • lines changed 10, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bed6bad.txt
  • lines changed 15, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bigWig1.bw
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/bigWigTruncated.bw
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/gnfAtlas2.bed15
  • lines changed 10, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/hg18_chromInfo.txt
  • lines changed 49, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/hg19_chromInfo.txt
  • lines changed 93, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/hugechrom1.txt
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/tagAlign1.txt
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/input/tagAlign2.txt
  • lines changed 1, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/makefile
  • lines changed 34, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodFemaleHg18.gappedPeak
  • lines changed 13, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodFemaleHg19.bed10
  • lines changed 34, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodFemaleHg19.bed11
  • lines changed 35, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodFemaleHg19.bed12
  • lines changed 35, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodFemaleHg19.narrowPeak
  • lines changed 40, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodHg18.fasta
  • lines changed 50, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodHg19.csfasta
  • lines changed 49, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodHg19.csqual
  • lines changed 49, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodHg19.fastq
  • lines changed 100, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg18.bedGraph
  • lines changed 29, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg18.pairedTagAlign
  • lines changed 63, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg18.tagAlign
  • lines changed 150, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed3
  • lines changed 89, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed4
  • lines changed 91, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed5
  • lines changed 89, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed6
  • lines changed 90, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed7
  • lines changed 141882, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed8
  • lines changed 141883, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bed9
  • lines changed 141884, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.bedRrbs
  • lines changed 141883, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.broadPeak
  • lines changed 94, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.broadPeak.gz
  • lines changed 0, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMaleHg19.short.bedRrbs
  • lines changed 2000, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodMalehg19.bedRnaElements
  • lines changed 624500, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodNoGenderHg19.bed15
  • lines changed 40, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/tests/goodNoGenderHg19.bedLogR
  • lines changed 69, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
• src/hg/encode3/validateFiles/validateFiles.c
  • lines changed 1829, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
  • lines changed 9, context: html, text, full: html, text
    Since we are trying to abort on the first error, no need for the -showBadAlign option since it should always show it.
  • lines changed 7, context: html, text, full: html, text
    type=bam is better for consistency than type=BAM
  • lines changed 2, context: html, text, full: html, text
    useful comment added
• src/hg/encode3/validateFiles/validateFilesUsage
  • lines changed 59, context: html, text, full: html, text
    Moved validateFiles from hg/encode/ to hg/encode3/ for further use in the new ENCODE3 system. Git will retain all history since the git mv command was used.
  • lines changed 59, context: html, text, full: html, text
    This temp file is no longer needed and is out of date anyway!
• src/hg/encode3/validateManifest/NOTES
  • lines changed 340, context: html, text, full: html, text
    Initial checking for validateManifest. This is very early development-stage still.
• src/hg/encode3/validateManifest/makefile
  • lines changed 19, context: html, text, full: html, text
    Initial checking for validateManifest. This is very early development-stage still.
  • lines changed 4, context: html, text, full: html, text
    First crude attempt at defining and running validateFiles commandlines from validateManifest.
• src/hg/encode3/validateManifest/validateManifest.c
  • lines changed 420, context: html, text, full: html, text
    Initial checking for validateManifest. This is very early development-stage still.
  • lines changed 212, context: html, text, full: html, text
    First crude attempt at defining and running validateFiles commandlines from validateManifest.
• src/hg/makefile
  • lines changed 2, context: html, text, full: html, text
    adding support for hg/encode3/ to makefile system