818ceca26a944560ea1ca3aaf07161480c364ce0 donnak Tue Apr 9 13:04:08 2013 -0700 Added link to Cancer Genomics Browser and an accompanying news item. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 8f3b49e..0ac1d4b 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,101 +1,86 @@
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- 05 March 2013 - - dbSNP 137 Available for mm10 -
+ 09 April 2013 + - The UCSC Cancer Genomics Browser Has a New Look! +

+ The UCSC Cancer Genomics group has recently remodeled the interface of the + Cancer Genomics Browser + to make it easier to navigate and more intuitive to use for + displaying, investigating, and analyzing cancer genomics data and + associated clinical information. This tool provides access to many types of + information—biological pathways, collections of genes, genomic and clinical + information—that can be used to sort, aggregate, and perform statistical + tests on a group of samples. + The Cancer Browser currently displays 473 datasets of 25 cancers from + The Cancer Genome Atlas + (TCGA) as well as data from the + Cancer Cell + Line Encyclopedia (CCLE) and Stand Up To Cancer. +

+ You can find more information about how to use this tool in the online + tutorial, + user's guide + and FAQ. + Any questions or comments should be directed to + genome-cancer@soe.ucsc.edu. +

+ + +

+ 05 March 2013 + - dbSNP 137 Available for mm10: We are pleased to announce the release of three tracks derived from dbSNP build 137, available on the mouse assembly (GRCm38/mm10). dbSNP build 137 is available at NCBI. The new tracks contain additional annotation data not included in previous dbSNP tracks, with corresponding coloring and filtering options in the Genome Browser. + Read more.

-

- As for dbSNP build 137, there are three tracks in this release. - One is a track containing all mappings of reference SNPs to the - mouse assembly, labeled "All SNPs (137)". The other two tracks - are subsets of this track and show interesting and easily defined - subsets of dbSNP: -

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  • Common SNPs (137): uniquely mapped variants that appear in - at least 1% of the population -
  • Mult. SNPs (137): variants that have been mapped to more - than one genomic location -
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- By default, only the Common SNPs (137) are visible; other - tracks must be made visible using the track controls. -

-

- You will find the three SNPs (137) tracks on the Mouse Dec. - 2011 (GRCm38/mm10) browser in the "Variation and Repeats" group. -

- The tracks were produced at UCSC by Angie Hinrichs and Luvina Guruvadoo. -

-

11 February 2013 - Denisova tracks released on hg19 browser: In conjunction with the publication of the paper by Meyer et al. - - A High-Coverage Genome Sequence from an Archaic Denisovan Individual + A High-Coverage Genome Sequence from an Archaic Denisovan Individual, the UCSC Genome Browser is hosting a set of new tracks. Read more.

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- 25 January 2013 - - Southern White Rhinoceros Genome Browser Release: - We are pleased to announce the release of a Genome Browser for the May 2012 - assembly of the Southern White Rhinoceros, Ceratotherium simum simum - (Broad Institute version cerSimSim1.0, UCSC version cerSim1). - Read more. -

- -

- 22 January 2013 - - New Baboon (papAnu2) Assembly Now Available in the Genome Browser: - We are pleased to announce the release of a Genome Browser for the March 2012 - assembly of the Olive Baboon, Papio anubis (Baylor Panu_2.0, UCSC version - papAnu2). - Read more. -

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