File Changes for galt

v282_preview2 to v282_base (2013-04-09 to 2013-04-16) v282

• src/hg/encode3/validateManifest/makefile
  • lines changed 2, context: html, text, full: html, text
    fixing allowed genomes (hg38 instead of hg36 oops), changing vm version comment to 2nd line since that makes it work with jims validated.txt loader code, added flush to tmp output
• src/hg/encode3/validateManifest/validateManifest.c
  • lines changed 7, context: html, text, full: html, text
    fixing allowed genomes (hg38 instead of hg36 oops), changing vm version comment to 2nd line since that makes it work with jims validated.txt loader code, added flush to tmp output
  • lines changed 31, context: html, text, full: html, text
    fixing some variable names to be conventional
  • lines changed 13, context: html, text, full: html, text
    adding simple gtf checking by running gffRead on the file; minor improvements in comments
  • lines changed 17, context: html, text, full: html, text
    improving bam handling
  • lines changed 25, context: html, text, full: html, text
    increment vm version to 1.2, added fileExists check early, make version comment clearer
  • lines changed 3, context: html, text, full: html, text
    adding support for format "unknown" as requested by jim
  • lines changed 13, context: html, text, full: html, text
    adding support for detecting validateFiles in the current directory and then using ./validateFiles in the commandline
  • lines changed 23, context: html, text, full: html, text
    added output_type, experiment, replicate, enriched_in as required fields