File Changes for kate

v282_preview2 to v282_base (2013-04-09 to 2013-04-16) v282

• src/hg/htdocs/ENCODE/index.html
  • lines changed 31, context: html, text, full: html, text
    Retire older news to archive, in preparation for adding info about new FAQ page. refs #9712
  • lines changed 69, context: html, text, full: html, text
    Add news and link for new FAQ page. Also add news item for January release of AWG Dnase tracks. refs #9712
• src/hg/htdocs/ENCODE/newsarch.html
  • lines changed 39, context: html, text, full: html, text
    Retire older news to archive, in preparation for adding info about new FAQ page. refs #9712
• src/hg/makeDb/doc/encodeAwgHg19.txt
  • lines changed 12, context: html, text, full: html, text
    Add two more scoring methods (2 std devs, asinh). refs #10569
  • lines changed 188, context: html, text, full: html, text
    Add quality term to CV. Create release notes. refs #10042
  • lines changed 1, context: html, text, full: html, text
    Wrap-up for QA. refs #10042
  • lines changed 1, context: html, text, full: html, text
    Wrap-up for QA. refs #10042
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeAwgTfbsUniform.release1.notes
  • lines changed 40, context: html, text, full: html, text
    Add quality term to CV. Create release notes. refs #10042
  • lines changed 3, context: html, text, full: html, text
    Update release notes. refs #10042
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 30, context: html, text, full: html, text
    Add quality term to CV. Create release notes. refs #10042
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgTfbsUniform.ra
  • lines changed 691, context: html, text, full: html, text
    Update md5sums after adding scores to download files. refs #10042
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.html
  • lines changed 5, context: html, text, full: html, text
    Update track description (quality, filtering). refs #10042
  • lines changed 1, context: html, text, full: html, text
    Fix a URL. refs #10042
  • lines changed 9, context: html, text, full: html, text
    Add info about score to track description. refs #10042
  • lines changed 124, context: html, text, full: html, text
    Reformat to <=100 lines. refs #10042
  • lines changed 5, context: html, text, full: html, text
    Format corrections. refs #10042
• src/utils/bedScore/bedScore.c
  • lines changed 103, context: html, text, full: html, text
    Add two more scoring methods (2 std devs, asinh). refs #10569
• src/utils/bedScore/tests/expected/broadGm12878Ctcf.jan2011.asinh.narrowPeak
  • lines changed 40006, context: html, text, full: html, text
    Add tests for std2 and asinh scoring methods. refs #10569
• src/utils/bedScore/tests/expected/encodeStd2Test.bed
  • lines changed 44159, context: html, text, full: html, text
    Fix test makefile to work with default targets from build dir. refs #10569
• src/utils/bedScore/tests/expected/uniform.bed
  • lines changed 20, context: html, text, full: html, text
    Add tests for std2 and asinh scoring methods. refs #10569
• src/utils/bedScore/tests/input/broadGm12878Ctcf.jan2011.asinh.narrowPeak
  • lines changed 40006, context: html, text, full: html, text
    Add tests for std2 and asinh scoring methods. refs #10569
• src/utils/bedScore/tests/input/uniform.bed
  • lines changed 20, context: html, text, full: html, text
    Add tests for std2 and asinh scoring methods. refs #10569
• src/utils/bedScore/tests/makefile
  • lines changed 13, context: html, text, full: html, text
    Add tests for std2 and asinh scoring methods. refs #10569
  • lines changed 21, context: html, text, full: html, text
    Fix test makefile to work with default targets from build dir. refs #10569
  • lines changed 3, context: html, text, full: html, text
    More clean-up of makefile to fit well in new makefile scheme