Commits for angie

v281_base to v282_preview (2013-03-25 to 2013-04-02) v282

• Use mustOpen not fopen so that stdout works correctly.
  • src/hg/protein/gadPos/gadPos.c - lines changed 1, context: html, text, full: html, text
• GAD data update. Refactored gadPos program and extended it to alsouse Gencode tables if available. Added gadAll.as for documentation.
  refs #10449
  
  • src/hg/lib/gadAll.as - lines changed 49, context: html, text, full: html, text
  • src/hg/lib/gadAll.sql - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 47, context: html, text, full: html, text
  • src/hg/protein/gadPos/gadPos.c - lines changed 185, context: html, text, full: html, text
• The trackDb override for gad applies only to beta,public now, andneeds to be phased out as QA progresses. refs #10449
  
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Minor fix in GAD details: if publication title etc. are missing, don't display them. refs #10449
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text