Commits for kate

v281_base to v282_preview (2013-03-25 to 2013-04-02) v282

• Additional references. Some clarifications and copy-edits. refs #9712 Portal: ENCODE FAQ
  • src/hg/htdocs/ENCODE/FAQ/index.html - lines changed 16, context: html, text, full: html, text
• Add back the good quality University of Chicago datasets (based on Anshul's quality curation) to the ENCODE Uniform TFBS track. refs #10024
  • src/hg/makeDb/doc/encodeAwgHg19.txt - lines changed 62, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgTfbsUniform.ra - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra - lines changed 46, context: html, text, full: html, text
• Merge branch 'awgTfbs'
• Remove 10 low quality datasets from Uniform TFBS. These failed IDR according to Anshul's quality metric curation. refs #10042
  • src/hg/makeDb/doc/encodeAwgHg19.txt - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgTfbsUniform.ra - lines changed 190, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra - lines changed 73, context: html, text, full: html, text
• Merge branch 'awgTfbs'
• Add quality from Anshul's spreadsheet to metadata of Uniform TFBS track. Also swap two datasets (mistakenly removed good and left in bad: CBEBP vs. CBEBZ (bad). #refs 10042
  • src/hg/makeDb/doc/encodeAwgHg19.txt - lines changed 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgTfbsUniform.ra - lines changed 708, context: html, text, full: html, text
• Add quality from Anshul's spreadsheet to metadata of Uniform TFBS track. Also swap two datasets (mistakenly removed good and left in bad: CBEBP vs. CBEBZ (bad). #refs 10042
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.html - lines changed 1, context: html, text, full: html, text