Commits for galt

v282_preview to v282_preview2 (2013-04-02 to 2013-04-09) v282

• added more info about types
  • src/hg/encode3/validateManifest/NOTES - lines changed 20, context: html, text, full: html, text
• using lineFileNext instead fo lineFileNextReal
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 33, context: html, text, full: html, text
• Trying to use directory structure jim adopted for encode2-import for the .as files and the chrom.sizes and the .2bit files
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 19, context: html, text, full: html, text
• cleaning up some debugging output for Eurie to use
  • src/hg/encode3/validateManifest/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 24, context: html, text, full: html, text
• adding #version comment to 1st line of validated.txt output
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 1, context: html, text, full: html, text
• adding support for optional column ucsc_db in manifest.txt to be used as the genome or assembly in place of being implicit in the file_name path
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 21, context: html, text, full: html, text
• incrementing version number to 1.1 -- will provide to Eurie as first alpha test
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 1, context: html, text, full: html, text
• adding warning if genome assembly is not one of the expected values
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 16, context: html, text, full: html, text
• adding a small additional option to have ucsc_db as the first column of the manifest.txt instead of file_name
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 2, context: html, text, full: html, text