391f8a18b3796e2b03ed96d20b532ad238bc9dbb hiram Tue Apr 2 13:43:00 2013 -0700 moving to minimal makefiles for kentUtils build refs #9104 diff --git src/utils/bigWigMerge/makefile src/utils/bigWigMerge/makefile index b434c49..6e0991e 100644 --- src/utils/bigWigMerge/makefile +++ src/utils/bigWigMerge/makefile @@ -1,32 +1,21 @@ -include ../../inc/common.mk - +kentSrc = ../.. +A = bigWigMerge +include $(kentSrc)/inc/userApp.mk L += -lm -lz -MYLIBDIR = ../../lib/${MACHTYPE} -MYLIBS = ${MYLIBDIR}/jkweb.a + TESTOUT = test/output TESTIN = test/in TESTEXPECTED = test/expected -A = bigWigMerge -O = bigWigMerge.o - -bigWigMerge: ${O} ${MYLIBS} - ${CC} ${COPT} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L - ${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE} - -compile:: ${O} - ${CC} ${COPT} -o ${A}${EXE} ${O} ${MYLIBS} $L - clean:: - rm -f ${A}${EXE} ${O} rm -rf ${TESTOUT} -tests:: bigWigMerge +tests:: ${A} mkdir -p ${TESTOUT} bedGraphToBigWig ${TESTIN}/t2.bed ${TESTIN}/hg19.chrom.sizes ${TESTOUT}/t2.bw bedGraphToBigWig ${TESTIN}/t1.bed ${TESTIN}/hg19.chrom.sizes ${TESTOUT}/t1.bw - bigWigMerge ${TESTOUT}/t1.bw ${TESTOUT}/t2.bw ${TESTOUT}/12merge.bedGraph + ${A} ${TESTOUT}/t1.bw ${TESTOUT}/t2.bw ${TESTOUT}/12merge.bedGraph diff ${TESTOUT}/12merge.bedGraph ${TESTEXPECTED}/12merge.bedGraph - bigWigMerge ${TESTOUT}/t2.bw ${TESTOUT}/t1.bw ${TESTOUT}/21merge.bedGraph + ${A} ${TESTOUT}/t2.bw ${TESTOUT}/t1.bw ${TESTOUT}/21merge.bedGraph diff ${TESTOUT}/21merge.bedGraph ${TESTEXPECTED}/21merge.bedGraph rm -rf ${TESTOUT}