175c45a32bf909202f672f1a9c972ffecc70d97a max Tue Apr 2 11:03:32 2013 -0700 option name was documented but actually didnt exist, fixed it diff --git src/utils/faCat/faCat.c src/utils/faCat/faCat.c index 52f8e6e..8c3264e 100644 --- src/utils/faCat/faCat.c +++ src/utils/faCat/faCat.c @@ -25,30 +25,31 @@ "usage:\n" " faCat [options] in.fa outRoot liftFileRoot\n" "\n" "Options:\n" " -gapSize=N - size of gap to insert between each sequence. (default 25).\n" " -maxOutputSize=N - Split file into multiple file if output exceeds N (default 2000000).\n" " -name=chrUn - name of output sequence\n" "\n" "Note: .fa and .lft will be appended to the outRoot and liftFile names resp.\n" ); } static struct optionSpec options[] = { {"gapSize", OPTION_INT}, {"maxOutputSize", OPTION_INT}, + {"name", OPTION_STRING}, {NULL, 0}, }; /* command line options */ char *name = "chrUn"; char *namePat = NULL; boolean vOption = FALSE; int minSize = -1; int maxSize = -1; int gapSize = 0; long maxOutputSize = 2000000; /* max size of output file */ boolean matchName(char *seqHeader) /* see if the sequence name matches */ {