e426642c94e0d6344caac652c8e44c7f9ad27b9a
hartera
  Tue Apr 30 10:19:00 2013 -0700
Changed retrocopy to retrogene for consistency.
diff --git src/hg/hgc/retroClick.c src/hg/hgc/retroClick.c
index e55dc88..b8fe4a0 100644
--- src/hg/hgc/retroClick.c
+++ src/hg/hgc/retroClick.c
@@ -517,31 +517,31 @@
     safef(scoreSql, sizeof(scoreSql), "select max(score) from %s%sInfo", mi->tblPre, mi->geneSet);
     }
 else
     {
     safef(alignTbl, sizeof(alignTbl), "%s%sAli%s", mi->tblPre, mi->geneSet, mi->suffix);
     safef(scoreSql, sizeof(scoreSql), "select max(score) from %s%sInfo%s", mi->tblPre, mi->geneSet, mi->suffix);
     }
 printf("<TABLE class=\"transMap\">\n");
 printf("<H3>Retrogene Statistics:</H3>\n");
 printf("<THEAD>\n");
 printf("<TR><TH>Feature<TH>Value </TR>\n");
 printf("</THEAD><TBODY>\n");
 if (sameString(pg->type, "singleExon"))
     printf("<TR><TH>Type of Parent<TD>%s</tr>\n",pg->type);
 else 
-    printf("<TR><TH>Expression of Retrocopy<TD>%s</TR>\n",pg->type);
+    printf("<TR><TH>Expression of Retrogene<TD>%s</TR>\n",pg->type);
 printf("<TR><TH>Score <TD>%d (range from 0 - %d)</TR>\n",  
         pg->score,
         sqlQuickNum(conn, scoreSql) );
 printf("<TR><TH>Parent Gene Alignment Coverage (Bases&nbsp;Matching Parent) <TD>%d %% &nbsp;(%d bp) </TR>\n", pg->coverage, pg->matches);
 printf("<TR><TH>Introns Processed Out <TD>%d out of %d (%d exons covered)\n", pg->processedIntrons, (pg->parentSpliceCount/2), pg->exonCover);
 printf("<TR><TH>Possible Introns or Gaps in Retrogene<TD>%d,%d\n", pg->intronCount, pg->alignGapCount);
 printf("<TR><TH>Conserved Splice Sites<TD>%d</TR>\n",  pg->conservedSpliceSites);
 printf("<TR><TH>Parent Splice Sites<TD>%d</TR>\n",  pg->parentSpliceCount);
 psl = getAlignments(conn, alignTbl, mi->pg->name);
 if (psl != NULL)
     {
     maxOverlap = (float)pg->maxOverlap/(float)(psl->match+psl->misMatch+psl->repMatch)  ;
     coverFactor = ((float)(psl->qSize-psl->qEnd)/(float)psl->qSize);
     }
 else