Commits for kate

v283_preview2 to v283_base (2013-04-30 to 2013-05-07) v283

• Edit description of factorSource type to fix spelling & grammar errors, also to clarify
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 3, context: html, text, full: html, text
• Add useTarget, noLetterOk, and noNormalize options to support 2012 TF clustering. refs #10097
  • src/hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c - lines changed 73, context: html, text, full: html, text
• First cut V3 TFBS clusters. refs #10097
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 37, context: html, text, full: html, text
• Just a comment
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
• Much work on TFBS Clusters V3. And some cleanup (still more needed). refs #10097
  • src/hg/makeDb/doc/encodeRegHg19.txt - lines changed 191, context: html, text, full: html, text
• Fix SK-N-SH tier designation -- it was just partially set to 2.5. QA item #8. refs #10042
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra - lines changed 6, context: html, text, full: html, text
• Uniquify long labels. QA item #9. refs #10042
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra - lines changed 7, context: html, text, full: html, text
• Clean up overlong link labels. QA item #7. refs #10042
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.html - lines changed 4, context: html, text, full: html, text
• Add typeOfTerm for antibody target so that can be included in metadata. refs #10042
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 15, context: html, text, full: html, text