85be21057a058a0bdb12caac2bae553376442f5a angie Mon Apr 15 10:56:28 2013 -0700 Refactoring to remove dependencies on annoGratorQuery from streamers,grators and formatters. Instead, provide basic assembly info and explicitly pass streamers(/grators) along with the rows that they produced into formatters. ref #6152 diff --git src/inc/annoStreamBigBed.h src/inc/annoStreamBigBed.h index b22ad09..06477b9 100644 --- src/inc/annoStreamBigBed.h +++ src/inc/annoStreamBigBed.h @@ -1,13 +1,13 @@ /* annoStreamBigBed -- subclass of annoStreamer for bigBed file or URL */ #ifndef ANNOSTREAMBIGBED_H #define ANNOSTREAMBIGBED_H #include "annoStreamer.h" -struct annoStreamer *annoStreamBigBedNew(char *fileOrUrl, int maxItems); +struct annoStreamer *annoStreamBigBedNew(char *fileOrUrl, struct annoAssembly *aa, int maxItems); /* Create an annoStreamer (subclass) object from a file or URL; if * maxItems is 0, all items from a query will be returned, otherwise * each query is limited to maxItems. */ #endif//ndef ANNOSTREAMBIGBED_H