85be21057a058a0bdb12caac2bae553376442f5a angie Mon Apr 15 10:56:28 2013 -0700 Refactoring to remove dependencies on annoGratorQuery from streamers,grators and formatters. Instead, provide basic assembly info and explicitly pass streamers(/grators) along with the rows that they produced into formatters. ref #6152 diff --git src/inc/annoStreamTab.h src/inc/annoStreamTab.h index d7966b1..e9cb92f 100644 --- src/inc/annoStreamTab.h +++ src/inc/annoStreamTab.h @@ -1,12 +1,13 @@ /* annoStreamTab -- subclass of annoStreamer for tab-separated text files/URLs */ #ifndef ANNOSTREAMTAB_H #define ANNOSTREAMTAB_H #include "annoStreamer.h" -struct annoStreamer *annoStreamTabNew(char *fileOrUrl, struct asObject *asObj); +struct annoStreamer *annoStreamTabNew(char *fileOrUrl, struct annoAssembly *aa, + struct asObject *asObj); /* Create an annoStreamer (subclass) object from a tab-separated text file/URL * whose columns are described by asObj (possibly excepting bin column at beginning). */ #endif//ndef ANNOSTREAMTAB_H