ee9a6c5c63eba2d963a5d7581185b1004fffe964 angie Mon Apr 15 14:06:10 2013 -0700 Added indentifying name to annoStreamer for output header info and better error messages. refs #6152 diff --git src/lib/annoStreamer.c src/lib/annoStreamer.c index d86e111..837e417 100644 --- src/lib/annoStreamer.c +++ src/lib/annoStreamer.c @@ -48,54 +48,58 @@ struct annoFilter *annoStreamerGetFilters(struct annoStreamer *self) /* Return supported filters with current settings. Callers can modify and free when done. */ { return annoFilterCloneList(self->filters); } void annoStreamerSetFilters(struct annoStreamer *self, struct annoFilter *newFilters) /* Free old filters and use clone of newFilters. */ { annoFilterFreeList(&(self->filters)); self->filters = annoFilterCloneList(newFilters); } void annoStreamerInit(struct annoStreamer *self, struct annoAssembly *assembly, - struct asObject *asObj) + struct asObject *asObj, char *name) /* Initialize a newly allocated annoStreamer with default annoStreamer methods and * default filters and columns based on asObj. * In general, subclasses' constructors will call this first; override nextRow, close, * and probably setRegion; and then initialize their private data. */ { self->assembly = assembly; self->getAutoSqlObject = annoStreamerGetAutoSqlObject; self->setAutoSqlObject = annoStreamerSetAutoSqlObject; self->setRegion = annoStreamerSetRegion; self->getHeader = annoStreamerGetHeader; self->getFilters = annoStreamerGetFilters; self->setFilters = annoStreamerSetFilters; self->positionIsGenome = TRUE; self->setAutoSqlObject(self, asObj); +if (name == NULL) + errAbort("annoStreamerInit: need non-NULL name"); +self->name = cloneString(name); } void annoStreamerFree(struct annoStreamer **pSelf) /* Free self. This should be called at the end of subclass close methods, after * subclass-specific connections are closed and resources are freed. */ { if (pSelf == NULL) return; struct annoStreamer *self = *pSelf; +freez(&(self->name)); freez(&(self->chrom)); annoFilterFreeList(&(self->filters)); freez(pSelf); } INLINE boolean findColumn(struct asColumn *columns, char *name, int *retIx, char **retName) /* Scan columns for name. * If found, set retIx to column index, set retName to clone of name, and return TRUE. * If not found, set retIx to -1, set retName to NULL, and return FALSE; */ { int ix = asColumnFindIx(columns, name); if (retIx != NULL) *retIx = ix; if (retName != NULL) {