85be21057a058a0bdb12caac2bae553376442f5a
angie
  Mon Apr 15 10:56:28 2013 -0700
Refactoring to remove dependencies on annoGratorQuery from streamers,grators and formatters.  Instead, provide basic assembly info and
explicitly pass streamers(/grators) along with the rows that they
produced into formatters. ref #6152

diff --git src/lib/makefile src/lib/makefile
index e7dc06b..8961d95 100644
--- src/lib/makefile
+++ src/lib/makefile
@@ -1,19 +1,19 @@
 include ../inc/common.mk
 
 
-O = aliType.o annoColumn.o annoFilter.o annoFormatter.o annoFormatTab.o \
+O = aliType.o annoAssembly.o annoColumn.o annoFilter.o annoFormatter.o annoFormatTab.o \
     annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o \
     annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamVcf.o \
     apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o \
     basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o \
     blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o \
     bwgCreate.o bwgQuery.o bwgValsOnChrom.o \
     cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o \
     cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o \
     dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o \
     dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o \
     emblParse.o errCatch.o errabort.o \
     fa.o ffAli.o ffScore.o fieldedTable.o filePath.o fixColor.o flydna.o fof.o \
     font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o \
     font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o \
     font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o \