File Changes for braney

v282_base to v283_preview (2013-04-16 to 2013-04-23) v283

• src/hg/hgGene/domains.c
  • lines changed 4, context: html, text, full: html, text
    fix linkout to Interpro in hgGene
• src/hg/hgGenome/hgGenome.c
  • lines changed 1, context: html, text, full: html, text
    add calls to setUdcCacheDir to genome graphs and hub connect #8072
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 1, context: html, text, full: html, text
    add calls to setUdcCacheDir to genome graphs and hub connect #8072
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 4, context: html, text, full: html, text
    fix some problems with assembly data hubs that Hiram found. refs #8072
• src/hg/hgTracks/hgTracks.c
  • lines changed 6, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
• src/hg/hgTracks/hgTracks.h
  • lines changed 7, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
• src/hg/hgTracks/simpleTracks.c
  • lines changed 8, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
• src/hg/hgTracks/snakeTrack.c
  • lines changed 588, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
  • lines changed 1, context: html, text, full: html, text
    a tweak to common.mk to look for stdc++ library, and to snakeTrack to keep track of mapName
• src/hg/hgc/bigBedClick.c
  • lines changed 1, context: html, text, full: html, text
    fix a bug in the dealing with bigBeds where it was assuming that the fields are white space delimited when they are really tab delimited
• src/hg/hgc/hgc.c
  • lines changed 3, context: html, text, full: html, text
    fix some problems with assembly data hubs that Hiram found. refs #8072
  • lines changed 29, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
  • lines changed 1, context: html, text, full: html, text
    fix a couple of problems that Max found in bigBed handling. One is spaces were causing problem in custom track bigBed support (not cloning memory which was being chopped by spaces), and the second problem was that bigBedIntervalQuery was adding one character at a time to a dyString that ended up growing to megabyte, which was very slow and timed out in hgc
• src/hg/lib/trackHub.c
  • lines changed 3, context: html, text, full: html, text
    order assemblies by orderKey in gateway drop-down.
  • lines changed 3, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
• src/inc/common.mk
  • lines changed 8, context: html, text, full: html, text
    polishing some of the snake track code, added support for HAL snakes in assembly hubs. refs #10637
  • lines changed 2, context: html, text, full: html, text
    a tweak to common.mk to look for stdc++ library, and to snakeTrack to keep track of mapName
• src/lib/bigBed.c
  • lines changed 16, context: html, text, full: html, text
    fix a couple of problems that Max found in bigBed handling. One is spaces were causing problem in custom track bigBed support (not cloning memory which was being chopped by spaces), and the second problem was that bigBedIntervalQuery was adding one character at a time to a dyString that ended up growing to megabyte, which was very slow and timed out in hgc