99f94720f116c9b3056bd2b1c202949bf613f8cf
aamp
  Wed Apr 24 05:47:59 2013 -0700
teased out a few routines for a sans-MySQL version of liftOver stuff in the top-level lib.
diff --git src/hg/inc/liftOver.h src/hg/inc/liftOver.h
index f501281..2cd20f7 100644
--- src/hg/inc/liftOver.h
+++ src/hg/inc/liftOver.h
@@ -1,22 +1,23 @@
 /* lift genome annotations between assemblies using chain files */
 
 #ifndef LIFTOVER_H
 #define LIFTOVER_H
 
-#define LIFTOVER_MINMATCH        0.95
-#define LIFTOVER_MINBLOCKS       1.00
+#ifndef LIFTOVERCORE_H
+#include "liftOverCore.h"
+#endif
 
 enum liftOverFileType
 {
     none = 0,
     bed = 1,
     positions = 2,
 };
 
 struct liftOverChain *liftOverChainList();
 /* Get list of all liftOver chains in the central database */
 
 void filterOutMissingChains(struct liftOverChain **pChainList);
 /* Filter out chains that don't exist.  Helps partially mirrored sites. */
 
 struct liftOverChain *liftOverChainListFiltered();