8f9914e3e7b315e85f00c6e3cb6b9d0d9b631e8b
brianlee
  Wed Apr 24 15:16:17 2013 -0700
Changing comments in script to match Ensemble QA wiki notes, adding lnk to wiki reminder
diff --git src/utils/qa/qaEnsGenes.csh src/utils/qa/qaEnsGenes.csh
index 1faf399..d681a7a 100755
--- src/utils/qa/qaEnsGenes.csh
+++ src/utils/qa/qaEnsGenes.csh
@@ -215,36 +215,35 @@
  echo "\n\n----------------------"
  echo "A few tracks have another table or two associated with them.  For"
  echo "example, when Ensembl uses different scaffold names than we do, there"
  echo "should be a translation table called: ensembleGeneScaffold.  This"
  echo "table supports a separate track called: Ensembl Assembly."
  echo "Assemblies with a UCSC Gene track should also have a table called:"
  echo "knownToEnsembl. Here's what this assembly has:"
  echo
  hgsql -Ne "SHOW TABLES LIKE 'ensemblGeneScaffold'" $db
  hgsql -Ne "SHOW TABLES LIKE 'knownToEnsembl'" $db
 
 end # huge loop through each database
 
 # remember the hgFixed.trackVersion table
 echo "\n\n----------------------"
-echo "Don't forget to also push (to beta and then to the RR) the appropriate"
-echo "rows from the trackVersion table in the hgFixed database."
-echo "These rows allow the correct version number to be displayed in hgTrackUi."
-echo "\nEdit the following pseudo-SQL statement to include only those"
-echo "assemblies you will be pushing:"
-echo 'hgsql -Ne "SELECT * FROM trackVersion WHERE version = ensGeneUpdateVersion AND db like 'dbsYouWillPush'" hgFixed'
+echo "Don't forget to also push (to beta and then to the RR)"
+echo "the trackVersion table in the hgFixed database."
+echo "There are rows to allow the correct version number to be displayed in hgTrackUi."
+echo "Before you push the table, check the differences with compareWholeTable.csh hgFixed trackVersion"
+echo "See Wiki for more details: http://genomewiki.cse.ucsc.edu/genecats/index.php/Ensembl_QA"
 
 # make sure the date column has been updated
 echo "\n\n----------------------"
 echo "the dateReference column in the hgFixed.trackVersion table"
 echo "should say 'current' for your database (or all):"
 hgsql -Ne "SELECT db, dateReference FROM trackVersion WHERE version = $ver AND name = 'ensGene' ORDER BY db" hgFixed
 
 # check that the corresponding upstream MAF files have been updated
 echo "\n\n----------------------"
 echo "In conjunction with an Ensembl Gene update, some upstream MAF files need"
 echo "to be rebuilt. Specifically those for: ornAna1, fr2, gasAcu1, oryLat2"
 echo "Check for them here (look for new dates) there should be 3 for each db:"
 echo "hgwdev:/data/apache/htdocs-hgdownload/goldenPath/<db>/multiz*way/maf/ensGene.upstream?000.maf.gz"
 echo
 
