37eaf27c4817eada5c218b827b4615b006f7148a
hiram
  Fri May 24 15:14:05 2013 -0700
updating userApps buildlist refs #9149
diff --git src/hg/makefile src/hg/makefile
index f746b71..a42d148 100644
--- src/hg/makefile
+++ src/hg/makefile
@@ -32,30 +32,33 @@
 BROKEN_TEST_DIRS = liftOver scaffoldFaToAgp
 
 BAD_DIRS = \
 	altGraph \
 	cgiExample \
 	geneOverlap \
 	hgBatch \
 	makeSeqs \
 	oneShot \
 	synMap \
 	encode \
 	wikiPlot
 
 # List of directories to build for userApps
 UTILS_APPLIST = \
+	autoDtd \
+	autoSql \
+	autoXml \
 	bedSort \
 	liftUp \
 	liftOver \
 	bedIntersect \
 	bedItemOverlapCount \
 	bedToGenePred \
 	blastToPsl \
 	checkCoverageGaps \
 	checkHgFindSpec \
 	checkTableCoords \
 	dbTrash \
 	encode3/validateFiles \
 	encode3/validateManifest \
 	estOrient \
 	featureBits \
@@ -96,33 +99,30 @@
 	qacToWig \
 	sqlToXml \
 	trfBig \
 	xmlCat \
 	xmlToSql
 
 # List of directories to build at UCSC
 UTIL_DIRS = \
 	affyTransciptome \
 	agpCloneCheck \
 	agpCloneList \
 	agpAllToFaFile \
 	agpToFa \
 	agpToGl \
 	altSplice \
-	autoDtd \
-	autoSql \
-	autoXml \
 	bedOrBlocks \
 	bedSplitOnChrom \
 	borfBig \
 	ctgFaToFa \
 	ctgToChromFa \
 	embossToPsl \
 	fakeFinContigs \
 	fakeOut \
 	ffaToFa \
 	fishClones \
 	fqToQa \
 	fqToQac \
 	fragPart \
 	gbGetEntries \
 	gbOneAcc \