22eee8de3f4b57a435b2003efc026da4dd2ff298
hiram
  Fri May 24 13:47:57 2013 -0700
updating userApps buildlist refs #9149
diff --git src/hg/mouseStuff/makefile src/hg/mouseStuff/makefile
index 677292f..f41ac9b 100644
--- src/hg/mouseStuff/makefile
+++ src/hg/mouseStuff/makefile
@@ -1,84 +1,84 @@
 # Build all directories in makeDb 
 
 include ../../inc/common.mk
 
 BADDIRS = \
         correctEst
 
 # List of directories to build for userApps
 UTILS_APPLIST = \
 	axtChain \
 	axtSort \
+	axtSwap \
 	axtToMaf \
 	axtToPsl \
 	chainAntiRepeat \
 	chainMergeSort \
 	chainPreNet \
 	chainSort \
 	chainSplit \
 	chainStitchId \
 	chainSwap \
 	chainToAxt \
 	chainToPsl \
 	lavToAxt \
 	lavToPsl \
 	mafCoverage \
 	mafFetch \
 	mafRanges \
 	mafToAxt \
-	mafToPsl
+	mafToPsl \
+	netChainSubset \
+	netClass \
+	netFilter \
+	netSplit \
+	netSyntenic \
+	netToAxt \
+	netToBed \
+	pslMrnaCover
 
 # List of directories to build at UCSC
 DIRS = \
 	axtAndBed \
 	axtBest \
 	axtCalcMatrix \
 	axtDropOverlap \
 	axtDropSelf \
 	axtFilter \
 	axtIndex \
 	axtPretty \
 	axtQueryCount \
 	axtRecipBest \
 	axtRescore \
 	axtSplitByTarget \
-	axtSwap \
 	axtToBed \
 	axtToChain \
 	bedCoverage \
 	calcGap \
 	chainDbToFile \
 	chainFilter \
 	chainNet \
 	chainStats \
 	gcForBed \
 	knownVsBlat \
 	libScan \
 	mousePoster \
-	netChainSubset \
-	netClass \
-	netFilter \
-	netSplit \
 	netStats \
-	netSyntenic \
-	netToAxt \
-	netToBed \
 	netToBedWithId \
 	orthologBySynteny \
 	phToPsl \
-	pslMrnaCover \
 	regionPicker \
 	rikenBestInCluster \
 	simpleChain \
 	splitSim \
 	subsetAxt \
 	subsetTraces \
 	whyConserved 
 
 # List of directories to build
 USE_DIRS = $(DIRS) $(UTILS_APPLIST)
 
 all: ${USE_DIRS:%=%.all}
 %.all:
 	cd $* && echo $* && ${MAKE}