6a64112e35285dd6bc89131787bfa3e84d57ddc9 hiram Fri May 24 12:15:43 2013 -0700 updating userApps buildlist refs #9149 diff --git src/userApps/README src/userApps/README index 0f29380..cbd51cd 100644 --- src/userApps/README +++ src/userApps/README @@ -28,37 +28,38 @@ 1. Fetch the userApps directory from the kent source: git archive --format=zip -9 \ --remote=git://genome-source.cse.ucsc.edu/kent.git \ HEAD src/userApps > userApps.zip unzip -d userApps -j userApps.zip Creates the directory: ./userApps/ with several small files. 2. Build the utilities: cd userApps make This build fetches (with git) approximately 200 Mb/7,800 files of - kent source code, and constructs command binaries of approximately 200 Mb. + kent source code, and constructs about 200 command binaries + of approximate size near 500 Mb. The resulting binaries are in ./userApps/bin/ Note: there are no required shell environment settings as discussed in the genome browser build instructions. In fact, this build - system will ignore any shell environment settings you may have - for the genome browser build environment. + system will ignore and override any shell environment settings + you may have for the genome browser build environment. 3. Install utilities The binaries are built into ./userApps/bin/ To install them in a global bin/ directory, copy them to a desired location, e.g.: sudo rsync -a -P ./userApps/bin/ /usr/local/bin/kentUtils/ The destination bin/kentUtils/ should be its own unique directory to avoid overwriting same-named binaries in a standard bin/ directory. Users add '/usr/local/bin/kentUtils' to their shell PATH to access the commands.