e44f7a936fe2829d091d8336eb7bcd6ed72985d4 hiram Thu May 23 16:34:56 2013 -0700 construct the kentUtils.Documentation.txt from the commands usage messages refs #9104 diff --git src/userApps/README src/userApps/README index ba7c13c..7d32f26 100644 --- src/userApps/README +++ src/userApps/README @@ -48,30 +48,34 @@ 4. There are 'parasol' binaries built in kent/src/parasol/bin/ Use these binaries to set up a job control system on a compute cluster or large machine with many CPU cores. See also: http://genecats.cse.ucsc.edu/eng/parasol.htm for more information. The usage messages from each command will help with the setup. ========= Documentation: Each 'kent' command contains its own documentation. Simply run the commands without any arguments to see the usage message for operating instructions. +When the utilities are built here, their usage messages have +been collected together in one file: + kentUtils.Documentation.txt + ========= Installing required packages: On a MacOS system, you will need the XCode system installed: https://developer.apple.com/xcode/ And the Mac Ports install system: http://www.macports.org/ With the mac ports and XCode systems installed, you can install the additional packages required (and helpful): sudo port install git-core gnutls rsync libpng mysql55 openssl curl wget On a typical Linux system, for example Ubuntu, use the apt-get command to install additional packages: sudo apt-get install git libssl-dev openssl mysql-client-5.1 \