6a64112e35285dd6bc89131787bfa3e84d57ddc9 hiram Fri May 24 12:15:43 2013 -0700 updating userApps buildlist refs #9149 diff --git src/userApps/fetchKentSource.sh src/userApps/fetchKentSource.sh index 6e9569e..28b351b 100755 --- src/userApps/fetchKentSource.sh +++ src/userApps/fetchKentSource.sh @@ -2,34 +2,34 @@ # # exit on any error: set -beEu -o pipefail # script to fetch extra source to use with the kent build, # and then selectively parts of the kent source tree, enough to # build just the user utilities # the combined samtabix source for the SAM/BAM/TABIX functions: rm -fr samtabix echo "fetch samtabix" 1>&2 git clone http://genome-source.cse.ucsc.edu/samtabix.git samtabix \ > /dev/null 2>&1 # These selective git archive commands only work up to a certain size -# of fetched source, hence the multiple set of individual fetches to -# get all the parts +# of fetched source (number of arguments), hence the multiple set of +# individual fetches to get all the parts -rm -f part1Src.zip part2Src.zip part3Src.zip part4Src.zip +rm -f part1Src.zip part2Src.zip part3Src.zip part4Src.zip part5Src.zip export partNumber=1 export ofN="of 5" echo "fetch kent source part ${partNumber} ${ofN}" 1>&2 git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \ --prefix=kent/ HEAD \ src/machTest.sh \ src/ameme \ src/aladdin \ src/blat \ src/dnaDust \ src/fuse \ src/gfClient \ src/gfServer \ src/index \