97a41387e5a5dafe84e94c34640ec494d2f316ea hiram Thu May 23 14:19:32 2013 -0700 approaching something useful refs #9104 diff --git src/userApps/fetchKentSource.sh src/userApps/fetchKentSource.sh index 624318b..54a11da 100755 --- src/userApps/fetchKentSource.sh +++ src/userApps/fetchKentSource.sh @@ -23,30 +23,31 @@ echo "fetch kent source part ${partNumber} ${ofN}" 1>&2 git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \ --prefix=kent/ HEAD \ src/machTest.sh \ src/ameme \ src/aladdin \ src/blat \ src/dnaDust \ src/fuse \ src/gfClient \ src/gfServer \ src/index \ src/makefile \ src/meta \ +src/parasol \ src/primeMate \ src/product \ src/protDust \ src/weblet \ src/inc \ src/utils \ src/jkOwnLib \ src/lib \ src/hg/affyTransciptome \ src/hg/agpAllToFaFile \ src/hg/agpCloneCheck \ src/hg/agpCloneList \ src/hg/agpToFa \ src/hg/agpToGl \ src/hg/altSplice \ @@ -67,40 +68,40 @@ src/hg/ctgFaToFa \ src/hg/ctgToChromFa \ src/hg/dbTrash \ src/hg/embossToPsl \ src/hg/estOrient \ src/hg/encode/validateFiles \ src/hg/fakeFinContigs \ src/hg/fakeOut \ src/hg/featureBits \ src/hg/ffaToFa \ src/hg/fishClones \ src/hg/fqToQa \ src/hg/fqToQac \ src/hg/fragPart \ src/hg/gbGetEntries \ -src/hg/gbOneAcc \ -src/hg/gbToFaRa > part${partNumber}Src.zip +src/hg/gbOneAcc > part${partNumber}Src.zip unzip -o -q part${partNumber}Src.zip ((partNumber++)) echo "fetch kent source part ${partNumber} ${ofN}" 1>&2 git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \ --prefix=kent/ HEAD \ +src/hg/gbToFaRa \ src/hg/geneBounds \ src/hg/genePredHisto \ src/hg/genePredSingleCover \ src/hg/genePredToBed \ src/hg/genePredToFakePsl \ src/hg/genePredToGtf \ src/hg/genePredToMafFrames \ src/hg/getFeatDna \ src/hg/getRna \ src/hg/getRnaPred \ src/hg/gpStats \ src/hg/gpToGtf \ src/hg/gpcrParser \ src/hg/gsBig \ src/hg/hgChroms \