b58dfee41fb6681e5b1fb6f1a84f5f8ca2408692 hiram Wed May 22 15:01:22 2013 -0700 releasing Gibbon/nomLeu3 browser refs #9812 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 2935504..a384065 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,86 +1,101 @@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <p> + <font face="courier" size="3"><b>22 May 2013 + Gibbon Genome Browser Released</b></font> + <p> + A Genome Browser is now available for the Gibbon + (<em>Nomascus leucogenys</em>) assembly released by the Gibbon Genome Sequencing Consortium + October 2012 (version Nleu_3.0, UCSC version nomLeu3). + Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01" + target="_blank">assembly construction details.</a> + For more information and statistics about this assembly, + see the NCBI assembly record for + <a href="http://www.ncbi.nlm.nih.gov/assembly/506498/" + target="_blank">Nleu_3.0</a>. + <p> + Bulk downloads of the sequence and annotation data may be obtained from the Genome + Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/nomLeu3/">FTP server</a> + or the + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#gibbon">Downloads</a> + page. Please observe the + <a href="goldenPath/credits.html#gibbon_use">conditions for use</a> + when accessing and using these data sets. The annotation tracks for this browser + were generated by UCSC and collaborators worldwide. See the + <a href="goldenPath/credits.html#gibbon_credits">Credits</a> page for a detailed + list of the organizations and individuals who contributed to this release. </p> + + <p> <font face="courier" size="3"><b>09 April 2013 - The UCSC Cancer Genomics Browser Has a New Look!</b></font> <p> The UCSC Cancer Genomics group has recently remodeled the interface of the <a href="https://genome-cancer.ucsc.edu/" target="blank">Cancer Genomics Browser</a> to make it easier to navigate and more intuitive to display, investigate, and analyze cancer genomics data and associated clinical information. This tool provides access to many types of information—biological pathways, collections of genes, genomic and clinical information—that can be used to sort, aggregate, and perform statistical tests on a group of samples. The Cancer Browser currently displays 473 datasets of 25 cancers from <a href="http://cancergenome.nih.gov/" target=_"blank">The Cancer Genome Atlas</a> (TCGA) as well as data from the <a href="http://www.broadinstitute.org/ccle/home" target="_blank">Cancer Cell Line Encyclopedia</a> (CCLE) and <a href="http://www.standup2cancer.org/" target="_blank">Stand Up To Cancer</a>. <p> You can find more information about how to use this tool in the online <a href="https://genome-cancer.soe.ucsc.edu/proj/site/hgHeatmap/#?tutorial=true" target="_blank" >tutorial</a>, <a href="https://genome-cancer.ucsc.edu/proj/site/help/" target="_blank">user's guide</a> and <a href="https://genome-cancer.ucsc.edu/proj/site/faq/" target="_blank">FAQ</a>. Any questions or comments should be directed to <a href="mailto:genome-cancer@soe.ucsc.edu">genome-cancer@soe.ucsc.edu</a>. </p> <!-- start archives --> <hr> <p> <font face="courier" size="3"><b>05 March 2013 - dbSNP 137 Available for mm10: </b></font> We are pleased to announce the release of three tracks derived from dbSNP build 137, available on the mouse assembly (GRCm38/mm10). dbSNP build 137 is available at NCBI. The new tracks contain additional annotation data not included in previous dbSNP tracks, with corresponding coloring and filtering options in the Genome Browser. <a href="goldenPath/newsarch.html#030513">Read more</a>. </p> - <p> - <font face="courier" size="3"><b>11 February 2013 - - Denisova tracks released on hg19 browser: </b></font> - In conjunction with the publication of the paper by Meyer <em>et al.</em> - <a href="http://www.ncbi.nlm.nih.gov/pubmed/22936568" - target=_blank>A High-Coverage Genome Sequence from an Archaic Denisovan Individual</a>, - the UCSC Genome Browser is hosting a set of new tracks. - <a href="goldenPath/newsarch.html#021113">Read more</a>. - </p> - ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>