6c6176de07f6282d2f6fde65e8210a4a8eeef09c
hiram
  Thu May 23 10:30:35 2013 -0700
adjusting README instructions and expanding the fetch operation refs #9104
diff --git src/userApps/README src/userApps/README
index b561846..4a1b628 100644
--- src/userApps/README
+++ src/userApps/README
@@ -1,69 +1,70 @@
 =========
 
 UCSC genome browser 'kent' bioinformatic utilities
 
 =========
 
 System Requirements:    (see notes below about installing packages)
 
 Linux/Unix/MacOSX system
 'git' source code management: http://git-scm.com/downloads
 gnu gcc - C code development system - http://www.gnu.org/software/gcc/
 gnu make - http://www.gnu.org/software/make/
 MySQL development system and libraries
 libpng
 libssl
 
 =========
 
 1. Fetch the userApps directory from the kent source:
    git archive --format=zip -9 \
       --remote=git://genome-source.cse.ucsc.edu/kent.git \
       HEAD src/userApps > userApps.zip
-   unzip -q userApps.zip
+   unzip -d userApps -j userApps.zip
 
-   Creates the directory ./userApps/
+   Creates the directory: ./userApps/
+   with several files.
 
 2. Build utilities:
    cd userApps
    make
 
    This build fetches (with git) approximately 60 Mb of kent source code,
    and constructs command binaries of approximately 120 Mb.
 
 3. Install utilities
    The binaries are built into userApps/bin/
    To install them in a global bin/ directory, copy them
    to desired location:
       sudo rsync -a -P bin/ /usr/local/bin/userApps/
 
    The destination bin/userApps/ should be its own unique directory
    to avoid overwriting same-named binaries in a standard bin/ directory.
 
    Users add '/usr/local/bin/userApps' to their shell PATH
    to access the commands.
 
 =========
 
 Installing required packages:
 
 On a MacOS system, you will need the XCode system installed:
    https://developer.apple.com/xcode/
 And the Mac Ports install system:
    http://www.macports.org/
 With the mac ports and XCode systems installed, you can install
 the additional packages required (and helpful):
   sudo port install git-core gnutls rsync libpng mysql55 openssl curl wget
 
 On a typical Linux system, for example Ubuntu, use the apt-get command
 to install additional packages:
    sudo apt-get install git libssl-dev openssl mysql-client-5.1 \
       mysql-client-core-5.1
 
 Or appropriate system management install software (e.g. 'yum' on CentOS)
 
 See also:
         https://help.ubuntu.com/8.04/serverguide/apt-get.html
         http://www.centos.org/docs/5/html/yum/
 
 =========