File Changes for kent

v283_base to v284_preview (2013-05-07 to 2013-05-14) v284

• src/hg/encode3/encodeDataWarehouse/README
  • lines changed 48, context: html, text, full: html, text
    Updating docs.
• src/hg/encode3/encodeDataWarehouse/edwMetaManiToTdb/edwMetaManiToTdb.c
  • lines changed 564, context: html, text, full: html, text
    Starting to work.
• src/hg/encode3/encodeDataWarehouse/edwMetaManiToTdb/makefile
  • lines changed 4, context: html, text, full: html, text
    Starting to work.
• src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c
  • lines changed 30, context: html, text, full: html, text
    Making script name be randomly generated since Laurence needs it to be unique across the project, not just unique across user. Using baby-babble name since name needs to be without special characters to fit into https basic authorization. Adding five second delay after password fails to check before reporting to make password cracking harder.
• src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c
  • lines changed 30, context: html, text, full: html, text
    Switching to using parallelFetch instead of simple cpFile for data transfer.
  • lines changed 6, context: html, text, full: html, text
    Taking the number of connections to open for parallel fetch from edwHost table instead of always 10. This will let us give more to Barcelona without making everybody else just thrash the disk harder.
• src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c
  • lines changed 6, context: html, text, full: html, text
    Reducing size of access key.
  • lines changed 43, context: html, text, full: html, text
    Making script name be randomly generated since Laurence needs it to be unique across the project, not just unique across user. Using baby-babble name since name needs to be without special characters to fit into https basic authorization. Adding five second delay after password fails to check before reporting to make password cracking harder.
• src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c
  • lines changed 22, context: html, text, full: html, text
    Switching to using parallelFetch instead of simple cpFile for data transfer.
• src/hg/encode3/encodeDataWarehouse/inc/edwLib.h
  • lines changed 3, context: html, text, full: html, text
    Exporting baby-name maker and making sure it works for larger ids.
• src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h
  • lines changed 6, context: html, text, full: html, text
    Adding paraFetchStream to host so can open extra streams for Barcelona. Adding an index to edwScriptRegistry.name since need to look it up now to find associated user.
• src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
  • lines changed 1, context: html, text, full: html, text
    Increasing time out for single file transfers to accommodate Barcelona speeds.
  • lines changed 5, context: html, text, full: html, text
    Exporting baby-name maker and making sure it works for larger ids.
• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as
  • lines changed 1, context: html, text, full: html, text
    Explicitly putting fileIdInTransit in edwSubmit record, since it was losing track of files transferred but not yet MD5 summed.
  • lines changed 3, context: html, text, full: html, text
    Adding paraFetchStream to host so can open extra streams for Barcelona. Adding an index to edwScriptRegistry.name since need to look it up now to find associated user.
• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c
  • lines changed 24, context: html, text, full: html, text
    Adding paraFetchStream to host so can open extra streams for Barcelona. Adding an index to edwScriptRegistry.name since need to look it up now to find associated user.
• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.sql
  • lines changed 6, context: html, text, full: html, text
    Adding paraFetchStream to host so can open extra streams for Barcelona. Adding an index to edwScriptRegistry.name since need to look it up now to find associated user.
• src/hg/encode3/encodeDataWarehouse/lib/resetEdw
  • lines changed 1, context: html, text, full: html, text
    Adding Laurence as an automatically added user.
• src/inc/net.h
  • lines changed 4, context: html, text, full: html, text
    Moving parallelFetch to a new module.
• src/inc/paraFetch.h
  • lines changed 26, context: html, text, full: html, text
    Moving parallelFetch to a new module.
• src/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Moving parallelFetch to a new module.
• src/lib/net.c
  • lines changed 647, context: html, text, full: html, text
    Moving parallelFetch to a new module.
• src/lib/paraFetch.c
  • lines changed 659, context: html, text, full: html, text
    Moving parallelFetch to a new module.
  • lines changed 30, context: html, text, full: html, text
    Improving commenting and making pointer return values optional.
  • lines changed 2, context: html, text, full: html, text
    Moving parallelFetch to a new module.
• src/utils/paraFetch/paraFetch.c
  • lines changed 1, context: html, text, full: html, text
    Moving parallelFetch to a new module.
• src/utils/paraSync/paraSync.c
  • lines changed 1, context: html, text, full: html, text
    Moving parallelFetch to a new module.