Commits for tdreszer

v284_preview to v284_preview2 (2013-05-14 to 2013-05-21) v284

• Quick change to remove 'antisense' as requested by B0b.
  • src/hg/htdocs/goldenPath/help/haplotypes.html - lines changed 2, context: html, text, full: html, text
• Significant changes to the UI as negotiated with Brooke, Pauline and B0b
  • src/hg/inc/haplotypes.h - lines changed 1, context: html, text, full: html, text
  • src/hg/js/alleles.js - lines changed 46, context: html, text, full: html, text
  • src/hg/lib/haplotypes.c - lines changed 304, context: html, text, full: html, text
• Forgot one simple hover message.
  • src/hg/lib/haplotypes.c - lines changed 5, context: html, text, full: html, text
• Moved 'topHat' style to HGStyle.css
  • src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/haplotypes.c - lines changed 2, context: html, text, full: html, text
• Sorry, screwed up the topHat style. This works.
  • src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text
• Fixed accounting bug where chrX reference haplotypes could have >100 percent frequency.
  • src/lib/vcfBits.c - lines changed 5, context: html, text, full: html, text
• Fixed problem where showing full sequence caused other sections to scroll horizontally off the page.
  • src/hg/js/alleles.js - lines changed 8, context: html, text, full: html, text
• Still trying to perfect the popScore. I think Fst calc is correct now.
  • src/hg/lib/haplotypes.c - lines changed 38, context: html, text, full: html, text
• Well that was short-lived. I do need to multiply Fst*N to get a good popScore.
  • src/hg/lib/haplotypes.c - lines changed 17, context: html, text, full: html, text
• Going overboard trying to get changes in before beta build.
  • src/hg/lib/haplotypes.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)