d2407c109382a58ace5d2ef2b441597b1c41b4a4 brianlee Thu Jun 13 10:34:26 2013 -0700 Adding news release and documentation for Ferret musFur1 release refs #6352 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index a384065..3474c38 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,101 +1,93 @@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> + <p> - <font face="courier" size="3"><b>22 May 2013 - Gibbon Genome Browser Released</b></font> + <font face="courier" size="3"><b>12 June 2013 + Ferret Genome Browser Released</b></font> <p> - A Genome Browser is now available for the Gibbon - (<em>Nomascus leucogenys</em>) assembly released by the Gibbon Genome Sequencing Consortium - October 2012 (version Nleu_3.0, UCSC version nomLeu3). - Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ADFV01" - target="_blank">assembly construction details.</a> + A Genome Browser is now available for the Ferret + (<em>Mustela putorius furo</em>) assembly released by the Ferret Genome Sequencing Consortium + April 2011 (version MusPutFur1.0, UCSC version musFur1). + Please note the <a href="http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AEYP01" + target="_blank">assembly construction details</a>. For more information and statistics about this assembly, see the NCBI assembly record for - <a href="http://www.ncbi.nlm.nih.gov/assembly/506498/" - target="_blank">Nleu_3.0</a>. + <a href="http://www.ncbi.nlm.nih.gov/assembly/286418/" + target="_blank">MusPutFur1.0</a>. <p> Bulk downloads of the sequence and annotation data may be obtained from the Genome - Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/nomLeu3/">FTP server</a> + Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/musFur1/" target="_blank">FTP server</a> or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#gibbon">Downloads</a> + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#Ferret" target="_blank">Downloads</a> page. Please observe the - <a href="goldenPath/credits.html#gibbon_use">conditions for use</a> + <a href="goldenPath/credits.html#ferret_use">conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators worldwide. See the - <a href="goldenPath/credits.html#gibbon_credits">Credits</a> page for a detailed + <a href="goldenPath/credits.html#ferret_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> + <p> + + <!-- start archives --> + <hr> + + <p> + <font face="courier" size="3"><b>22 May 2013 + Gibbon Genome Browser Released</b></font> + A Genome Browser is now available for the Gibbon + (<em>Nomascus leucogenys</em>) assembly released by the Gibbon Genome Sequencing Consortium + October 2012 (version Nleu_3.0, UCSC version nomLeu3). + <a href="goldenPath/newsarch.html#052213">Read more</a>.</p> <p> <font face="courier" size="3"><b>09 April 2013 - The UCSC Cancer Genomics Browser Has a New Look!</b></font> - <p> The UCSC Cancer Genomics group has recently remodeled the interface of the <a href="https://genome-cancer.ucsc.edu/" target="blank">Cancer Genomics Browser</a> to make it easier to navigate and more intuitive to display, investigate, and analyze cancer genomics data and - associated clinical information. This tool provides access to many types of - information—biological pathways, collections of genes, genomic and clinical - information—that can be used to sort, aggregate, and perform statistical - tests on a group of samples. - The Cancer Browser currently displays 473 datasets of 25 cancers from - <a href="http://cancergenome.nih.gov/" target=_"blank">The Cancer Genome Atlas</a> - (TCGA) as well as data from the - <a href="http://www.broadinstitute.org/ccle/home" target="_blank">Cancer Cell - Line Encyclopedia</a> (CCLE) and <a href="http://www.standup2cancer.org/" - target="_blank">Stand Up To Cancer</a>. - <p> - You can find more information about how to use this tool in the online - <a href="https://genome-cancer.soe.ucsc.edu/proj/site/hgHeatmap/#?tutorial=true" - target="_blank" >tutorial</a>, - <a href="https://genome-cancer.ucsc.edu/proj/site/help/" - target="_blank">user's guide</a> - and <a href="https://genome-cancer.ucsc.edu/proj/site/faq/" target="_blank">FAQ</a>. - Any questions or comments should be directed to - <a href="mailto:genome-cancer@soe.ucsc.edu">genome-cancer@soe.ucsc.edu</a>. - </p> + associated clinical information. + <a href="goldenPath/newsarch.html#040913">Read more</a>.</p> - <!-- start archives --> - <hr> <p> <font face="courier" size="3"><b>05 March 2013 - dbSNP 137 Available for mm10: </b></font> We are pleased to announce the release of three tracks derived from dbSNP build 137, available on the mouse assembly (GRCm38/mm10). dbSNP build 137 is available at NCBI. The new tracks contain additional annotation data not included in previous dbSNP tracks, with corresponding coloring and filtering options in the Genome Browser. <a href="goldenPath/newsarch.html#030513">Read more</a>. </p> ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>